Factsheet for TraesCS5D01G221600.1

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

extracellular 2
endoplasmic reticulum 2
vacuole 3
plasma membrane 4
golgi 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plasma membrane
Any Predictor:	secretory
BaCelLo:	secretory
MultiLoc:	plasma membrane
PProwler:	secretory
WoLF PSORT:	vacuole
YLoc:	plasma membrane

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS4A01G319000.1
TraesCS5B01G560400.1
TraesCS5D01G569800.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
ATCG00720.1	TraesCS4A01G319000.1	AT4G22890.1	18243102
ATCG00720.1	TraesCS5B01G560400.1	AT4G22890.1	18243102
ATCG00720.1	TraesCS5D01G569800.1	AT4G22890.1	18243102

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CAA33977	Rice	plasma membrane	90.75	95.81
ATCG00720.1	Thale cress	plasma membrane	89.87	94.88
HORVU5Hr1G065020.1	Barley	golgi, mitochondrion, plasma membrane	96.48	94.4
TraesCS1D01G183000.1	Wheat	plastid	96.04	93.97
EES02990	Sorghum	cytosol, endoplasmic reticulum, plasma membrane	95.59	93.53
GRMZM5G800780_P01	Maize	plastid	95.59	93.53
TraesCS6A01G192500.1	Wheat	plasma membrane	94.27	92.24
KRH75043	Soybean	endoplasmic reticulum, mitochondrion, plastid, vacuole	45.37	88.79
TraesCS5D01G009100.1	Wheat	golgi, plastid, vacuole	35.24	86.02
TraesCS1A01G130200.1	Wheat	mitochondrion	51.98	82.52
CDX71257	Canola	cytosol, plastid, vacuole	34.36	79.59
TraesCS7D01G239000.1	Wheat	mitochondrion	21.59	13.03
TraesCS4D01G140500.1	Wheat	mitochondrion, plasma membrane	21.59	12.31
TraesCS2D01G564500.1	Wheat	mitochondrion	19.82	11.66

Protein Annotations

MapMan:1.1.2.2	Gene3D:1.20.810.10	InterPro:Cyt_B6_PetB	InterPro:Cyt_b/b6_N	InterPro:Cytb/b6-like_sf	InterPro:Di-haem_cyt_TM
GO:GO:0003674	GO:GO:0003824	GO:GO:0005488	GO:GO:0005506	GO:GO:0005575	GO:GO:0006091
GO:GO:0008150	GO:GO:0008152	GO:GO:0009055	GO:GO:0009987	GO:GO:0016020	GO:GO:0016021
GO:GO:0016491	GO:GO:0020037	GO:GO:0022900	GO:GO:0022904	GO:GO:0045158	InterPro:IPR005797
InterPro:IPR027387	HAMAP:MF_00633	PFAM:PF00033	PIRSF:PIRSF000032	PFscan:PS51002	PANTHER:PTHR19271
PANTHER:PTHR19271:SF8	SUPFAM:SSF81342	TMHMM:TMhelix	EnsemblPlantsGene:TraesCS5D01G221600	EnsemblPlants:TraesCS5D01G221600.1	TIGR:cd00284

Description

No Description!

Coordinates

chr5D:+:329192310..329192993

Molecular Weight (calculated)

25408.7 Da

IEP (calculated)

9.426

GRAVY (calculated)

0.607

Length

227 amino acids

Sequence
(BLAST)

001: MALRGGLGLV TYLNKVYDWF EERLEIQAIA DDITSKYVPP HVNIFYCLGG ITLTCFLVQV ATGFAMTYYY RPTVTGAFSS VQYIMTEANF GWLIRLVHRW
101: SASMMVLMMI LHVFRVYLTG GFKKPRELTW VTGVVLAVLT ASFGVTGYSL PWDQIGYWAV KIVTGVPHAI PVIGLPLVEL LRGSASVGQS TLTHFYSLHT
201: FVLPLLTAVF MLMHFPMIRK QGISGPL

Best Arabidopsis Sequence Match ( ATCG00720.1 )
(BLAST)

001: MSKVYDWFEE RLEIQAIADD ITSKYVPPHV NIFYCLGGIT LTCFLVQVAT GFAMTFYYRP TVTEAFASVQ YIMTEANFGW LIRSVHRWSA SMMVLMMILH
101: VFRVYLTGGF KKPRELTWVT GVVLGVLTAS FGVTGYSLPW DQIGYWAVKI VTGVPDAIPV IGSPLVELLR GSASVGQSTL TRFYSLHTFV LPLLTAVFML
201: MHFLMIRKQG ISGPL

Arabidopsis Description

PETBCytochrome b6 [Source:UniProtKB/Swiss-Prot;Acc:P56773]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.