Factsheet for TraesCS1D01G183000.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plasma membrane 2
mitochondrion 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	mitochondrion, plasma membrane
MultiLoc:	plasma membrane
PProwler:	mitochondrion
WoLF PSORT:	plasma membrane
YLoc:	mitochondrion

plastid: 18071923
plastid: 22160430
golgi: 25769308

msms PMID: 22160430 doi

AH Kamal, K Cho, S Komatsu, N Uozumi, JS Choi, SH Woo

Department of Crop Science, Chungbuk National University, 410 Seongbong-ro, Heungdeok-gu, Cheongju, Chungbuk, 361-763, Korea.

msms PMID: 25769308 doi

AL Chateigner-Boutin, M Suliman, B Bouchet, C Alvarado, V Lollier, H Rogniaux, F Guillon, C Larré

INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France colette.larre@nantes.inra.fr., INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France.

msms PMID: 18071923 doi

LA Blomqvist, M Ryberg, C Sundqvist

Department of Plant and Environmental Sciences, Göteborg University, P.O. Box 461, 405 30 Göteborg, Sweden.

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS4A01G319000.1
TraesCS5B01G560400.1
TraesCS5D01G569800.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
ATCG00720.1	TraesCS4A01G319000.1	AT4G22890.1	18243102
ATCG00720.1	TraesCS5B01G560400.1	AT4G22890.1	18243102
ATCG00720.1	TraesCS5D01G569800.1	AT4G22890.1	18243102

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
HORVU6Hr1G049420.1	Barley	mitochondrion	98.28	98.28
CAA33977	Rice	plasma membrane	90.52	97.67
EES02990	Sorghum	cytosol, endoplasmic reticulum, plasma membrane	97.41	97.41
GRMZM5G800780_P01	Maize	plastid	97.41	97.41
ATCG00720.1	Thale cress	plasma membrane	89.66	96.74
TraesCS5D01G221600.1	Wheat	plasma membrane	93.97	96.04
TraesCS5D01G009100.1	Wheat	golgi, plastid, vacuole	37.5	93.55
KRH75043	Soybean	endoplasmic reticulum, mitochondrion, plastid, vacuole	45.26	90.52
CDX71257	Canola	cytosol, plastid, vacuole	34.05	80.61
TraesCS7D01G239000.1	Wheat	mitochondrion	21.12	13.03
TraesCS4D01G140500.1	Wheat	mitochondrion, plasma membrane	21.12	12.31
TraesCS2D01G564500.1	Wheat	mitochondrion	19.4	11.66

Protein Annotations

MapMan:1.1.2.2	Gene3D:1.20.810.10	InterPro:Cyt_B6_PetB	InterPro:Cyt_b/b6_N	InterPro:Cytb/b6-like_sf	InterPro:Di-haem_cyt_TM
GO:GO:0003674	GO:GO:0003824	GO:GO:0005488	GO:GO:0005506	GO:GO:0005575	GO:GO:0006091
GO:GO:0008150	GO:GO:0008152	GO:GO:0009055	GO:GO:0009987	GO:GO:0016020	GO:GO:0016021
GO:GO:0016491	GO:GO:0020037	GO:GO:0022900	GO:GO:0022904	GO:GO:0045158	InterPro:IPR005797
InterPro:IPR027387	HAMAP:MF_00633	PFAM:PF00033	PIRSF:PIRSF000032	PFscan:PS51002	PANTHER:PTHR19271
PANTHER:PTHR19271:SF8	SUPFAM:SSF81342	TMHMM:TMhelix	EnsemblPlantsGene:TraesCS1D01G183000	EnsemblPlants:TraesCS1D01G183000.1	TIGR:cd00284

Description

No Description!

Coordinates

chr1D:+:254500341..254501039

Molecular Weight (calculated)

26017.2 Da

IEP (calculated)

9.007

GRAVY (calculated)

0.558

Length

232 amino acids

Sequence
(BLAST)

001: MKFSYTTLRG GLGLVTYLNK VYDWFEERLE IQAIADDITS KYVPPHVNIF YCLGGITLTC FLVQVATGFA MTFYYRPTVT EAFSSVQYIM TEANFGWLIR
101: SVHRWSASMM VLMMILHVFR VYLTGGFKKT RELTWVTGVV LAVLTASFGV TGYSLPWDQI GYWAVKIVTG VPDAIPVIGS PLVELLRGSA SVGQSTLTCF
201: YSLHTFVLPL LTAVFMLMHF PMIRKQGISG PL

Best Arabidopsis Sequence Match ( ATCG00720.1 )
(BLAST)

001: MSKVYDWFEE RLEIQAIADD ITSKYVPPHV NIFYCLGGIT LTCFLVQVAT GFAMTFYYRP TVTEAFASVQ YIMTEANFGW LIRSVHRWSA SMMVLMMILH
101: VFRVYLTGGF KKPRELTWVT GVVLGVLTAS FGVTGYSLPW DQIGYWAVKI VTGVPDAIPV IGSPLVELLR GSASVGQSTL TRFYSLHTFV LPLLTAVFML
201: MHFLMIRKQG ISGPL

Arabidopsis Description

PETBCytochrome b6 [Source:UniProtKB/Swiss-Prot;Acc:P56773]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.