Subcellular Localization
min:
: max
Winner_takes_all: golgi, plastid, vacuole
Predictor Summary:
Predictor Summary:
- golgi 1
- mitochondrion 1
- plastid 1
- vacuole 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| TraesCS4A01G319000.1 | |
| TraesCS5B01G560400.1 | |
| TraesCS5D01G569800.1 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| ATCG00720.1 | TraesCS4A01G319000.1 | AT4G22890.1 | 18243102 |
| ATCG00720.1 | TraesCS5B01G560400.1 | AT4G22890.1 | 18243102 |
| ATCG00720.1 | TraesCS5D01G569800.1 | AT4G22890.1 | 18243102 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS1D01G183000.1 | Wheat | plastid | 93.55 | 37.5 |
| TraesCS5D01G221600.1 | Wheat | plasma membrane | 86.02 | 35.24 |
| ATCG00720.1 | Thale cress | plasma membrane | 73.12 | 31.63 |
| HORVU0Hr1G037920.1 | Barley | plasma membrane | 54.84 | 28.18 |
| TraesCS4D01G140500.1 | Wheat | mitochondrion, plasma membrane | 18.28 | 4.27 |
| TraesCS7D01G239000.1 | Wheat | mitochondrion | 17.2 | 4.26 |
| GSMUA_AchrUn_... | Banana | mitochondrion | 4.3 | 4.12 |
| TraesCS2D01G564500.1 | Wheat | mitochondrion | 13.98 | 3.37 |
| PGSC0003DMT400049986 | Potato | cytosol, extracellular, golgi | 2.15 | 2.3 |
| GRMZM5G884960_P01 | Maize | plastid | 2.15 | 1.15 |
| CDX71257 | Canola | cytosol, plastid, vacuole | 0.0 | 0.0 |
| Solyc01g007540.2.1 | Tomato | plastid | 0.0 | 0.0 |
Protein Annotations
| Gene3D:1.20.810.10 | MapMan:35.1 | InterPro:Cyt_B6_PetB | InterPro:Cyt_b/b6_N | InterPro:Cytb/b6-like_sf | InterPro:Di-haem_cyt_TM |
| GO:GO:0003674 | GO:GO:0003824 | GO:GO:0005488 | GO:GO:0005506 | GO:GO:0005575 | GO:GO:0006091 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009055 | GO:GO:0009987 | GO:GO:0016020 | GO:GO:0016021 |
| GO:GO:0016491 | GO:GO:0020037 | GO:GO:0022900 | GO:GO:0022904 | GO:GO:0045158 | InterPro:IPR005797 |
| InterPro:IPR027387 | PFAM:PF00033 | PFscan:PS51002 | PANTHER:PTHR19271 | PANTHER:PTHR19271:SF8 | SUPFAM:SSF81342 |
| TMHMM:TMhelix | EnsemblPlantsGene:TraesCS5D01G009100 | EnsemblPlants:TraesCS5D01G009100.1 | : | : | : |
Description
No Description!
Coordinates
chr5D:-:6198658..6198939
Molecular Weight (calculated)
10723.0 Da
IEP (calculated)
4.868
GRAVY (calculated)
0.325
Length
93 amino acids
Sequence
(BLAST)
(BLAST)
1: MKFSYTALRG GLGLVTYLNK VYDWFEERLE IQGEYVPPHV NIFYCLGGIT LTCFLVQVAT GFAMTFYYRP TVTEAFSSVQ YIMTEATFGW LMN
001: MSKVYDWFEE RLEIQAIADD ITSKYVPPHV NIFYCLGGIT LTCFLVQVAT GFAMTFYYRP TVTEAFASVQ YIMTEANFGW LIRSVHRWSA SMMVLMMILH
101: VFRVYLTGGF KKPRELTWVT GVVLGVLTAS FGVTGYSLPW DQIGYWAVKI VTGVPDAIPV IGSPLVELLR GSASVGQSTL TRFYSLHTFV LPLLTAVFML
201: MHFLMIRKQG ISGPL
101: VFRVYLTGGF KKPRELTWVT GVVLGVLTAS FGVTGYSLPW DQIGYWAVKI VTGVPDAIPV IGSPLVELLR GSASVGQSTL TRFYSLHTFV LPLLTAVFML
201: MHFLMIRKQG ISGPL
Arabidopsis Description
PETBCytochrome b6 [Source:UniProtKB/Swiss-Prot;Acc:P56773]
SUBAcon: [plasma membrane]
SUBAcon: [plasma membrane]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.