Factsheet for GSMUA_AchrUn_randomP08500_001

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 3
mitochondrion 5
plasma membrane 2
extracellular 1
endoplasmic reticulum 1
vacuole 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	mitochondrion
Any Predictor:	mitochondrion, plastid, secretory
BaCelLo:	plastid
EpiLoc:	plastid
iPSORT:	mitochondrion
MultiLoc:	mitochondrion
Plant-mPloc:	plasma membrane
Predotar:	secretory
PProwler:	mitochondrion
TargetP:	mitochondrion
WoLF PSORT:	plastid
YLoc:	mitochondrion

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr2P12240_001
GSMUA_Achr4P28830_001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
ATCG00720.1	GSMUA_Achr2P12240_001	AT4G22890.1	18243102
ATCG00720.1	GSMUA_Achr4P28830_001	AT4G22890.1	18243102

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH75043	Soybean	endoplasmic reticulum, mitochondrion, plastid, vacuole	34.02	28.45
HORVU1Hr1G003510.1	Barley	extracellular, mitochondrion, peroxisome	30.93	24.0
HORVU0Hr1G037920.1	Barley	plasma membrane	35.05	18.78
TraesCS1A01G130200.1	Wheat	mitochondrion	25.77	17.48
ATCG00720.1	Thale cress	plasma membrane	38.14	17.21
CAA33977	Rice	plasma membrane	37.11	16.74
EES02990	Sorghum	cytosol, endoplasmic reticulum, plasma membrane	37.11	15.52
PGSC0003DMT400049986	Potato	cytosol, extracellular, golgi	13.4	14.94
TraesCS6A01G192500.1	Wheat	plasma membrane	35.05	14.66
CDX71257	Canola	cytosol, plastid, vacuole	7.22	7.14
Solyc07g032450.1.1	Tomato	plasma membrane, plastid, vacuole	3.09	4.35
TraesCS5D01G009100.1	Wheat	golgi, plastid, vacuole	4.12	4.3
GRMZM5G884960_P01	Maize	plastid	4.12	2.3
HORVU0Hr1G034350.1	Barley	endoplasmic reticulum, vacuole	3.09	2.16
HORVU6Hr1G049430.1	Barley	endoplasmic reticulum, vacuole	3.09	2.16
Solyc01g007540.2.1	Tomato	plastid	3.09	2.16
GSMUA_AchrUn_...	Banana	plasma membrane	4.12	1.52

Protein Annotations

Gene3D:1.20.810.10	MapMan:35.2	InterPro:Cyt_B6_PetB	InterPro:Cyt_b/b6_N	InterPro:Cytb/b6-like_sf	InterPro:Di-haem_cyt_TM
GO:GO:0003674	GO:GO:0003824	GO:GO:0005488	GO:GO:0005506	GO:GO:0005575	GO:GO:0006091
GO:GO:0008150	GO:GO:0008152	GO:GO:0009055	GO:GO:0009987	GO:GO:0016020	GO:GO:0016021
GO:GO:0016491	GO:GO:0020037	GO:GO:0022900	GO:GO:0022904	GO:GO:0045158	EnsemblPlantsGene:GSMUA_AchrUn_randomG08500_001
EnsemblPlants:GSMUA_AchrUn_randomP08500_001	EnsemblPlants:GSMUA_AchrUn_randomT08500_001	InterPro:IPR005797	InterPro:IPR027387	UniProt:M0U7G0	PFAM:PF13631
PANTHER:PTHR19271	PANTHER:PTHR19271:SF8	SUPFAM:SSF81342	SignalP:SignalP-TM	UniParc:UPI0002949DB0	:

Description

Hypothetical protein [Source:GMGC_GENE;Acc:GSMUA_AchrUn_randomG08500_001]

Coordinates

chrchrUn_random:+:37786672..37786965

Molecular Weight (calculated)

10959.6 Da

IEP (calculated)

9.636

GRAVY (calculated)

0.014

Length

97 amino acids

Sequence
(BLAST)

1: MNPNHLRKGL LSFLLGRCYA GNPAQDKLGR PTGCSLKLIG ESDQFIERMM VLMMILHVFR VYLTGGFQKP RVVYRFGFGC IDRGVTGYSL PWDSDSI

Best Arabidopsis Sequence Match ( ATCG00720.1 )
(BLAST)

001: MSKVYDWFEE RLEIQAIADD ITSKYVPPHV NIFYCLGGIT LTCFLVQVAT GFAMTFYYRP TVTEAFASVQ YIMTEANFGW LIRSVHRWSA SMMVLMMILH
101: VFRVYLTGGF KKPRELTWVT GVVLGVLTAS FGVTGYSLPW DQIGYWAVKI VTGVPDAIPV IGSPLVELLR GSASVGQSTL TRFYSLHTFV LPLLTAVFML
201: MHFLMIRKQG ISGPL

Arabidopsis Description

PETBCytochrome b6 [Source:UniProtKB/Swiss-Prot;Acc:P56773]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.