Factsheet for GRMZM5G884960_P01

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

nucleus 1
plastid 1
golgi 1
mitochondrion 2
vacuole 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	golgi, mitochondrion, nucleus, plastid, vacuole
BaCelLo:	nucleus
iPSORT:	plastid
MultiLoc:	golgi
PProwler:	mitochondrion
WoLF PSORT:	vacuole
YLoc:	mitochondrion

plastid: 18453340
plastid: 20089766
plastid: 22065420
plastid: 23198870

msms PMID: 20089766 doi

G Friso, W Majeran, M Huang, Q Sun, KJ van Wijk

Department of Plant Biology, Cornell University, Ithaca, New York 14853, USA.

msms PMID: 23198870 doi

M Huang, G Friso, K Nishimura, X Qu, PD Olinares, W Majeran, Q Sun, KJ van Wijk

Department of Plant Biology, Cornell University, Ithaca, New York 14853, United States.

msms PMID: 18453340 doi

W Majeran, B Zybailov, AJ Ytterberg, J Dunsmore, Q Sun, KJ van Wijk

Department of Plant Biology, Cornell University, Ithaca, New York 14853, USA.

msms PMID: 22065420 doi

W Majeran, G Friso, Y Asakura, X Qu, M Huang, L Ponnala, KP Watkins, A Barkan, KJ van Wijk

Department of Plant Biology, Cornell University, Ithaca, New York 14853, USA.

PPI

Inferred distinct locusB in Crop

locusB	locations
Zm00001d019454_P001
Zm00001d034900_P001
Zm00001d034904_P001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
ATCG00720.1	Zm00001d019454_P001	AT4G22890.1	18243102
ATCG00720.1	Zm00001d034900_P001	AT4G22890.1	18243102
ATCG00720.1	Zm00001d034904_P001	AT4G22890.1	18243102

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc01g007540.2.1	Tomato	plastid	78.74	98.56
HORVU0Hr1G034350.1	Barley	endoplasmic reticulum, vacuole	48.28	60.43
HORVU6Hr1G049430.1	Barley	endoplasmic reticulum, vacuole	48.28	60.43
CDX71257	Canola	cytosol, plastid, vacuole	9.2	16.33
ATCG00720.1	Thale cress	plasma membrane	10.92	8.84
GRMZM5G800780_P01	Maize	plastid	10.92	8.19
PGSC0003DMT400049986	Potato	cytosol, extracellular, golgi	3.45	6.9
GSMUA_AchrUn_...	Banana	mitochondrion	2.3	4.12
GRMZM5G884707_P01	Maize	mitochondrion, plasma membrane	8.05	3.61
TraesCS5D01G009100.1	Wheat	golgi, plastid, vacuole	1.15	2.15

Protein Annotations

MapMan:1.1.2.4	Gene3D:1.10.287.980	Gene3D:1.20.5.510	InterPro:Cyt_b/b6_C	InterPro:Cyt_b/b6_C_sf	InterPro:Cyt_b6/f_cplx_suIV
GO:GO:0003674	GO:GO:0003824	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0006091	GO:GO:0008150	GO:GO:0008152	GO:GO:0009055	GO:GO:0009507	GO:GO:0009535
GO:GO:0009536	GO:GO:0009579	GO:GO:0009767	GO:GO:0009987	GO:GO:0015979	GO:GO:0016020
GO:GO:0016021	GO:GO:0016491	GO:GO:0042651	GO:GO:0045156	GO:GO:0045158	GO:GO:0055114
EnsemblPlantsGene:GRMZM5G884960	EnsemblPlants:GRMZM5G884960_P01	EnsemblPlants:GRMZM5G884960_T01	InterPro:IPR005798	HAMAP:MF_01344	PFAM:PF00032
PIRSF:PIRSF000033	PFscan:PS51003	PANTHER:PTHR19271	PANTHER:PTHR19271:SF15	SUPFAM:SSF81648	TIGRFAMs:TIGR01156
TMHMM:TMhelix	UniParc:UPI0000D89844	:	:	:	:

Description

No Description!

Coordinates

chrPt:+:75428..75952

Molecular Weight (calculated)

18988.7 Da

IEP (calculated)

8.452

GRAVY (calculated)

0.514

Length

174 amino acids

Sequence
(BLAST)

001: MSGSFGGWIL KNSPIPITKK PDLNDPVLRA KLAKGMGHNY YGEPAWPNDL LYIFPVVILG TIACNVGLAV LEPSMIGEPA DPFATPLEIL PEWYFFPVFQ
101: ILRTVPNKLL GVLLMVSVPT GLLTVPFLEN VNKFQNPFRR PVATTVFLIG TAVALWLGIG ATLPIDKSLT LGLF

Best Arabidopsis Sequence Match ( ATCG00730.1 )
(BLAST)

001: MGVTKKPDLN DPVLRAKLAK GMGHNYYGEP AWPNDLLYIF PVVILGTIAC NVGLAVLEPS MIGEPADPFA TPLEILPEWY FFPVFQILRT VPNKLLGVLL
101: MVSVPAGLLT VPFLENVNKF QNPFRRPVAT TVFLIGTAAA LWLGIGATLP IDKSLTLGLF

Arabidopsis Description

PETDCytochrome b6-f complex subunit 4 [Source:UniProtKB/Swiss-Prot;Acc:P56774]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.