Factsheet for Solyc01g007540.2.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

extracellular 3
endoplasmic reticulum 3
vacuole 5
plasma membrane 3
golgi 3
plastid 2
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	cytosol, plastid, secretory
BaCelLo:	secretory
iPSORT:	plastid
MultiLoc:	cytosol
Plant-mPloc:	plastid
Predotar:	secretory
PProwler:	secretory
WoLF PSORT:	vacuole
YLoc:	vacuole

plastid: 22908117
plastid: 26371478

msms PMID: 22908117 doi

C Barsan, M Zouine, E Maza, W Bian, I Egea, M Rossignol, D Bouyssie, C Pichereaux, E Purgatto, M Bouzayen, A Latché, JC Pech

Université de Toulouse, Institut National Polytechnique-Ecole Nationale Supérieure Agronomique de Toulouse, Génomique et Biotechnologie des Fruits, Castanet-Tolosan F-31326, France.

msms PMID: 26371478 doi

M Suzuki, S Takahashi, T Kondo, H Dohra, Y Ito, Y Kiriiwa, M Hayashi, S Kamiya, M Kato, M Fujiwara, Y Fukao, M Kobayashi, N Nagata, R Motohashi

Faculty of Agriculture, Shizuoka University, Shizuoka city, Shizuoka, Japan., Faculty of Science, Japan Woman's University, Bunkyo-ku, Tokyo, Japan., Instrumental Research Support Office, Research Institute of Green Science and Technology, Shizuoka University, Shizuoka city, Shizuoka, Japan., The Plant Science Education Unit, Nara Institute of Science and Technology, Ikoma city, Nara, Japan.

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc08g007770.2.1
Solyc08g080050.2.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
ATCG00720.1	Solyc08g007770.2.1	AT4G22890.1	18243102
ATCG00720.1	Solyc08g080050.2.1	AT4G22890.1	18243102

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GRMZM5G884960_P01	Maize	plastid	98.56	78.74
HORVU0Hr1G034350.1	Barley	endoplasmic reticulum, vacuole	57.55	57.55
HORVU6Hr1G049430.1	Barley	endoplasmic reticulum, vacuole	57.55	57.55
CDX71257	Canola	cytosol, plastid, vacuole	11.51	16.33
TraesCS1A01G130200.1	Wheat	mitochondrion	14.39	13.99
KRH75043	Soybean	endoplasmic reticulum, mitochondrion, plastid, vacuole	7.91	9.48
Solyc01g007530.2.1	Tomato	plastid	12.23	7.98
ATCG00720.1	Thale cress	plasma membrane	12.23	7.91
CAA33977	Rice	plasma membrane	12.23	7.91
EES02990	Sorghum	cytosol, endoplasmic reticulum, plasma membrane	12.23	7.33
TraesCS6A01G192500.1	Wheat	plasma membrane	12.23	7.33
PGSC0003DMT400049986	Potato	cytosol, extracellular, golgi	4.32	6.9
GSMUA_AchrUn_...	Banana	mitochondrion	2.16	3.09
Solyc09g050020.1.1	Tomato	nucleus	5.76	2.2
Solyc07g032450.1.1	Tomato	plasma membrane, plastid, vacuole	0.0	0.0
TraesCS5D01G009100.1	Wheat	golgi, plastid, vacuole	0.0	0.0

Protein Annotations

MapMan:1.1.2.4	Gene3D:1.10.287.980	Gene3D:1.20.5.510	InterPro:Cyt_b/b6_C	InterPro:Cyt_b/b6_C_sf	InterPro:Cyt_b6/f_cplx_suIV
GO:GO:0003674	GO:GO:0003824	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0006091	GO:GO:0008150	GO:GO:0008152	GO:GO:0009055	GO:GO:0009507	GO:GO:0009534
GO:GO:0009535	GO:GO:0009536	GO:GO:0009579	GO:GO:0009767	GO:GO:0009987	GO:GO:0015979
GO:GO:0016020	GO:GO:0016021	GO:GO:0016491	GO:GO:0042651	GO:GO:0045156	GO:GO:0045158
GO:GO:0055114	InterPro:IPR005798	UniProt:K4ASV6	PFAM:PF00032	PIRSF:PIRSF000033	PFscan:PS51003
PANTHER:PTHR19271	PANTHER:PTHR19271:SF4	SUPFAM:SSF81648	EnsemblPlantsGene:Solyc01g007540.2	EnsemblPlants:Solyc01g007540.2.1	TIGRFAMs:TIGR01156
TMHMM:TMhelix	UniParc:UPI0000171D18	:	:	:	:

Description

Cytochrome b6-f complex subunit 4 [Source:Projected from Arabidopsis thaliana (ATCG00730) UniProtKB/Swiss-Prot;Acc:P56774]

Coordinates

chr1:+:1874669..1875351

Molecular Weight (calculated)

15226.0 Da

IEP (calculated)

4.605

GRAVY (calculated)

0.724

Length

139 amino acids

Sequence
(BLAST)

001: MGHNYYGEPA WPNDLLYIFP VVILGTIACN VGLAVLEPSM IGEPADPFAT PLEILPEWYF FPVFQILRTV PNKLLGVLLM VSVPAGLLTV PFLENVNKFQ
101: NPFRRPVATT VFLIGTAVAL WLGIGATLPI DKSLTLGLF

Best Arabidopsis Sequence Match ( ATCG00730.1 )
(BLAST)

001: MGVTKKPDLN DPVLRAKLAK GMGHNYYGEP AWPNDLLYIF PVVILGTIAC NVGLAVLEPS MIGEPADPFA TPLEILPEWY FFPVFQILRT VPNKLLGVLL
101: MVSVPAGLLT VPFLENVNKF QNPFRRPVAT TVFLIGTAAA LWLGIGATLP IDKSLTLGLF

Arabidopsis Description

PETDCytochrome b6-f complex subunit 4 [Source:UniProtKB/Swiss-Prot;Acc:P56774]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.