Factsheet for Solyc01g007530.2.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

nucleus 1
plastid 1
plasma membrane 5
extracellular 1
endoplasmic reticulum 1
vacuole 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	nucleus, plastid, secretory
BaCelLo:	nucleus
EpiLoc:	plastid
MultiLoc:	plasma membrane
Plant-mPloc:	plasma membrane
PProwler:	secretory
WoLF PSORT:	plasma membrane
YLoc:	plasma membrane

plastid: 20363867
plastid: 22908117
plastid: 26371478
nucleus: 28394025

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

msms PMID: 22908117 doi

C Barsan, M Zouine, E Maza, W Bian, I Egea, M Rossignol, D Bouyssie, C Pichereaux, E Purgatto, M Bouzayen, A Latché, JC Pech

Université de Toulouse, Institut National Polytechnique-Ecole Nationale Supérieure Agronomique de Toulouse, Génomique et Biotechnologie des Fruits, Castanet-Tolosan F-31326, France.

msms PMID: 20363867 doi

C Barsan, P Sanchez-Bel, C Rombaldi, I Egea, M Rossignol, M Kuntz, M Zouine, A Latché, M Bouzayen, JC Pech

Université de Toulouse, INP-ENSA Toulouse, Génomique et Biotechnologie des Fruits, Avenue de l'Agrobiopole BP 32607, F-31326 Castanet-Tolosan, France.

msms PMID: 26371478 doi

M Suzuki, S Takahashi, T Kondo, H Dohra, Y Ito, Y Kiriiwa, M Hayashi, S Kamiya, M Kato, M Fujiwara, Y Fukao, M Kobayashi, N Nagata, R Motohashi

Faculty of Agriculture, Shizuoka University, Shizuoka city, Shizuoka, Japan., Faculty of Science, Japan Woman's University, Bunkyo-ku, Tokyo, Japan., Instrumental Research Support Office, Research Institute of Green Science and Technology, Shizuoka University, Shizuoka city, Shizuoka, Japan., The Plant Science Education Unit, Nara Institute of Science and Technology, Ikoma city, Nara, Japan.

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc08g007770.2.1
Solyc08g080050.2.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
ATCG00720.1	Solyc08g007770.2.1	AT4G22890.1	18243102
ATCG00720.1	Solyc08g080050.2.1	AT4G22890.1	18243102

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
ATCG00720.1	Thale cress	plasma membrane	98.12	97.21
CAA33977	Rice	plasma membrane	98.12	97.21
KRH75043	Soybean	endoplasmic reticulum, mitochondrion, plastid, vacuole	50.23	92.24
EES02990	Sorghum	cytosol, endoplasmic reticulum, plasma membrane	98.12	90.09
TraesCS6A01G192500.1	Wheat	plasma membrane	96.24	88.36
TraesCS1A01G130200.1	Wheat	mitochondrion	57.28	85.31
CDX71257	Canola	cytosol, plastid, vacuole	38.03	82.65
Solyc07g032450.1.1	Tomato	plasma membrane, plastid, vacuole	21.13	65.22
Solyc09g050020.1.1	Tomato	nucleus	22.07	12.91
Solyc01g007540.2.1	Tomato	plastid	7.98	12.23

Protein Annotations

MapMan:1.1.2.2	Gene3D:1.20.810.10	InterPro:Cyt_B6_PetB	InterPro:Cyt_b/b6_N	InterPro:Cytb/b6-like_sf	InterPro:Di-haem_cyt_TM
GO:GO:0003674	GO:GO:0003824	GO:GO:0005488	GO:GO:0005506	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0006091	GO:GO:0008150	GO:GO:0008152	GO:GO:0009055
GO:GO:0009507	GO:GO:0009535	GO:GO:0009536	GO:GO:0009579	GO:GO:0009987	GO:GO:0015979
GO:GO:0016020	GO:GO:0016021	GO:GO:0016491	GO:GO:0020037	GO:GO:0022900	GO:GO:0022904
GO:GO:0045158	GO:GO:0046872	GO:GO:0055114	InterPro:IPR005797	InterPro:IPR027387	UniProt:K4ASV5
HAMAP:MF_00633	PFAM:PF00033	PIRSF:PIRSF000032	PFscan:PS51002	PANTHER:PTHR19271	PANTHER:PTHR19271:SF8
SUPFAM:SSF81342	EnsemblPlantsGene:Solyc01g007530.2	EnsemblPlants:Solyc01g007530.2.1	TMHMM:TMhelix	UniParc:UPI0002762AF8	:

Description

No Description!

Coordinates

chr1:+:1872279..1874091

Molecular Weight (calculated)

23950.7 Da

IEP (calculated)

8.633

GRAVY (calculated)

0.585

Length

213 amino acids

Sequence
(BLAST)

001: MIYDWFEERL EIQAIADDIT SKYVPPHVNI FYCLGGITLT CFLVQVATGF AMTFYYRPTV TEAFASVQYI MTEANFGWLI RSVHRWSASM MVLMMILHVF
101: RVYLTGGFKK PRELTWVTGV VLAVLTASFG VTGYSLPWDQ IGYWAVKIVT GVPDAIPVIG SPLVELLRGS ASVGQSTLTR FYSLHTFVLP LLTAVFMLMH
201: FPMIRKQGIS GPL

Best Arabidopsis Sequence Match ( ATCG00720.1 )
(BLAST)

001: MSKVYDWFEE RLEIQAIADD ITSKYVPPHV NIFYCLGGIT LTCFLVQVAT GFAMTFYYRP TVTEAFASVQ YIMTEANFGW LIRSVHRWSA SMMVLMMILH
101: VFRVYLTGGF KKPRELTWVT GVVLGVLTAS FGVTGYSLPW DQIGYWAVKI VTGVPDAIPV IGSPLVELLR GSASVGQSTL TRFYSLHTFV LPLLTAVFML
201: MHFLMIRKQG ISGPL

Arabidopsis Description

PETBCytochrome b6 [Source:UniProtKB/Swiss-Prot;Acc:P56773]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.