Subcellular Localization
min:
: max
Winner_takes_all: plasma membrane
Predictor Summary:
Predictor Summary:
- extracellular 2
- endoplasmic reticulum 2
- vacuole 2
- plasma membrane 4
- golgi 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| TraesCS4A01G319000.1 | |
| TraesCS5B01G560400.1 | |
| TraesCS5D01G569800.1 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| ATCG00720.1 | TraesCS4A01G319000.1 | AT4G22890.1 | 18243102 |
| ATCG00720.1 | TraesCS5B01G560400.1 | AT4G22890.1 | 18243102 |
| ATCG00720.1 | TraesCS5D01G569800.1 | AT4G22890.1 | 18243102 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| HORVU5Hr1G065020.1 | Barley | golgi, mitochondrion, plasma membrane | 96.98 | 96.98 |
| Solyc01g007530.2.1 | Tomato | plastid | 88.36 | 96.24 |
| CAA33977 | Rice | plasma membrane | 88.79 | 95.81 |
| EES02990 | Sorghum | cytosol, endoplasmic reticulum, plasma membrane | 95.69 | 95.69 |
| GRMZM5G800780_P01 | Maize | plastid | 95.69 | 95.69 |
| ATCG00720.1 | Thale cress | plasma membrane | 87.93 | 94.88 |
| TraesCS5D01G221600.1 | Wheat | plasma membrane | 92.24 | 94.27 |
| KRH75043 | Soybean | endoplasmic reticulum, mitochondrion, plastid, vacuole | 44.4 | 88.79 |
| TraesCS1A01G130200.1 | Wheat | mitochondrion | 52.16 | 84.62 |
| CDX71257 | Canola | cytosol, plastid, vacuole | 34.48 | 81.63 |
| PGSC0003DMT400049986 | Potato | cytosol, extracellular, golgi | 24.14 | 64.37 |
| Solyc07g032450.1.1 | Tomato | plasma membrane, plastid, vacuole | 18.1 | 60.87 |
| GSMUA_AchrUn_... | Banana | mitochondrion | 14.66 | 35.05 |
| TraesCS3A01G188100.1 | Wheat | peroxisome, plasma membrane, vacuole | 19.4 | 25.71 |
| TraesCS5A01G430300.1 | Wheat | plasma membrane | 18.53 | 21.72 |
| TraesCS5A01G502900.1 | Wheat | plasma membrane | 16.81 | 20.0 |
| TraesCS2A01G266300.1 | Wheat | plasma membrane | 15.95 | 18.97 |
| TraesCS7A01G237900.1 | Wheat | mitochondrion | 20.26 | 13.39 |
| Solyc01g007540.2.1 | Tomato | plastid | 7.33 | 12.23 |
| TraesCS4A01G150300.1 | Wheat | mitochondrion, plasma membrane | 19.83 | 11.03 |
| TraesCS1A01G112900.1 | Wheat | mitochondrion | 16.81 | 10.46 |
Protein Annotations
| MapMan:1.1.2.2 | Gene3D:1.20.810.10 | InterPro:Cyt_B6_PetB | InterPro:Cyt_b/b6_N | InterPro:Cytb/b6-like_sf | InterPro:Di-haem_cyt_TM |
| GO:GO:0003674 | GO:GO:0003824 | GO:GO:0005488 | GO:GO:0005506 | GO:GO:0005575 | GO:GO:0006091 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009055 | GO:GO:0009987 | GO:GO:0016020 | GO:GO:0016021 |
| GO:GO:0016491 | GO:GO:0020037 | GO:GO:0022900 | GO:GO:0022904 | GO:GO:0045158 | InterPro:IPR005797 |
| InterPro:IPR027387 | HAMAP:MF_00633 | PFAM:PF00033 | PIRSF:PIRSF000032 | PFscan:PS51002 | PANTHER:PTHR19271 |
| PANTHER:PTHR19271:SF8 | SUPFAM:SSF81342 | TMHMM:TMhelix | EnsemblPlantsGene:TraesCS6A01G192500 | EnsemblPlants:TraesCS6A01G192500.1 | TIGR:cd00284 |
Description
No Description!
Coordinates
chr6A:-:260129731..260130429
Molecular Weight (calculated)
26076.4 Da
IEP (calculated)
9.242
GRAVY (calculated)
0.598
Length
232 amino acids
Sequence
(BLAST)
(BLAST)
001: MKFSYTALRG GLGLVTYLNK LYDWFEERLE IQAIADDITS KYVPPHVNIL YCLGGITLTC FLVQVATGFA MTFYYRPTVT EAFSSVQYIM IEANFGWLIR
101: SVHRWSASMM VLMMILHVFR VYLIGGFKKS RELTWVTCVV LAVLTASFGV TGYSLPWDQI GYWAVKIVTG VPDAIPVIGS PLVELLRGSA SVGQSTLTRF
201: YSLHTFVLPL LTAVFMLMHF PMIRKQGISG PL
101: SVHRWSASMM VLMMILHVFR VYLIGGFKKS RELTWVTCVV LAVLTASFGV TGYSLPWDQI GYWAVKIVTG VPDAIPVIGS PLVELLRGSA SVGQSTLTRF
201: YSLHTFVLPL LTAVFMLMHF PMIRKQGISG PL
001: MSKVYDWFEE RLEIQAIADD ITSKYVPPHV NIFYCLGGIT LTCFLVQVAT GFAMTFYYRP TVTEAFASVQ YIMTEANFGW LIRSVHRWSA SMMVLMMILH
101: VFRVYLTGGF KKPRELTWVT GVVLGVLTAS FGVTGYSLPW DQIGYWAVKI VTGVPDAIPV IGSPLVELLR GSASVGQSTL TRFYSLHTFV LPLLTAVFML
201: MHFLMIRKQG ISGPL
101: VFRVYLTGGF KKPRELTWVT GVVLGVLTAS FGVTGYSLPW DQIGYWAVKI VTGVPDAIPV IGSPLVELLR GSASVGQSTL TRFYSLHTFV LPLLTAVFML
201: MHFLMIRKQG ISGPL
Arabidopsis Description
PETBCytochrome b6 [Source:UniProtKB/Swiss-Prot;Acc:P56773]
SUBAcon: [plasma membrane]
SUBAcon: [plasma membrane]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.