CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid, vacuole, cytosol

Predictor Summary:

extracellular 1
endoplasmic reticulum 1
vacuole 2
plasma membrane 1
golgi 1
plastid 2
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, plastid, vacuole
Any Predictor:	cytosol, secretory
BaCelLo:	secretory
iPSORT:	plastid
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	vacuole

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX94134
CDY10819
CDY41285
CDY68977

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
ATCG00720.1	CDX94134	AT4G22890.1	18243102
ATCG00720.1	CDY10819	AT4G22890.1	18243102
ATCG00720.1	CDY41285	AT4G22890.1	18243102
ATCG00720.1	CDY68977	AT4G22890.1	18243102

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS1A01G130200.1	Wheat	mitochondrion	78.57	53.85
HORVU7Hr1G052180.1	Barley	plastid	81.63	46.51
HORVU1Hr1G063040.1	Barley	plastid	81.63	46.51
KRH75043	Soybean	endoplasmic reticulum, mitochondrion, plastid, vacuole	50.0	42.24
PGSC0003DMT400049986	Potato	cytosol, extracellular, golgi	34.69	39.08
ATCG00720.1	Thale cress	plasma membrane	83.67	38.14
CAA33977	Rice	plasma membrane	83.67	38.14
Solyc01g007530.2.1	Tomato	plastid	82.65	38.03
HORVU6Hr1G049420.1	Barley	mitochondrion	82.65	34.91
AGP50784	Barley	plastid	82.65	34.91
HORVU5Hr1G065020.1	Barley	golgi, mitochondrion, plasma membrane	82.65	34.91
GRMZM5G800780_P01	Maize	plastid	81.63	34.48
EES02990	Sorghum	cytosol, endoplasmic reticulum, plasma membrane	81.63	34.48
TraesCS6A01G192500.1	Wheat	plasma membrane	81.63	34.48
TraesCS5D01G221600.1	Wheat	plasma membrane	79.59	34.36
TraesCS1D01G183000.1	Wheat	plastid	80.61	34.05
HORVU2Hr1G062090.1	Barley	plasma membrane	77.55	32.76
HORVU0Hr1G037920.1	Barley	plasma membrane	40.82	22.1
Solyc01g007540.2.1	Tomato	plastid	16.33	11.51
HORVU6Hr1G049430.1	Barley	endoplasmic reticulum, vacuole	15.31	10.79
HORVU0Hr1G034350.1	Barley	endoplasmic reticulum, vacuole	15.31	10.79
GRMZM5G884960_P01	Maize	plastid	16.33	9.2
GSMUA_AchrUn_...	Banana	mitochondrion	7.14	7.22
HORVU1Hr1G003510.1	Barley	extracellular, mitochondrion, peroxisome	9.18	7.2
Solyc07g032450.1.1	Tomato	plasma membrane, plastid, vacuole	0.0	0.0
TraesCS5D01G009100.1	Wheat	golgi, plastid, vacuole	0.0	0.0

Protein Annotations

Gene3D:1.20.810.10	MapMan:35.1	GO:A0A078C335	EnsemblPlants:CDX71257	ProteinID:CDX71257	ProteinID:CDX71257.1
InterPro:Cyt_B6_PetB	InterPro:Cyt_b/b6_N	InterPro:Cytb/b6-like_sf	InterPro:Di-haem_cyt_TM	GO:GO:0003674	GO:GO:0003824
GO:GO:0005488	GO:GO:0005506	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0006091	GO:GO:0008150	GO:GO:0008152	GO:GO:0009055	GO:GO:0009507	GO:GO:0009534
GO:GO:0009535	GO:GO:0009536	GO:GO:0009579	GO:GO:0009987	GO:GO:0015979	GO:GO:0016020
GO:GO:0016021	GO:GO:0016491	GO:GO:0020037	GO:GO:0022900	GO:GO:0022904	GO:GO:0042651
GO:GO:0045158	GO:GO:0046872	GO:GO:0055114	EnsemblPlantsGene:GSBRNA2T00144857001	InterPro:IPR005797	InterPro:IPR027387
PFAM:PF00033	PFscan:PS51002	PANTHER:PTHR19271	PANTHER:PTHR19271:SF8	SUPFAM:SSF81342	TMHMM:TMhelix
UniParc:UPI0004EEE22D	:	:	:	:	:

Description

BnaC07g05360D

Coordinates

chrLK031792:+:1951523..1952462

Molecular Weight (calculated)

10809.5 Da

IEP (calculated)

9.191

GRAVY (calculated)

0.561

Length

98 amino acids

Sequence
(BLAST)

1: MLHQSQTLPQ PLILSNSCYS LPWDQIGYWA VKIVTGVPDA IPVIGSPLVE LLRGSASVGQ STLTRFYSLH TFVLPLLTAV FMLMHFLMIR KQGISGPL

Best Arabidopsis Sequence Match ( ATCG00720.1 )
(BLAST)

001: MSKVYDWFEE RLEIQAIADD ITSKYVPPHV NIFYCLGGIT LTCFLVQVAT GFAMTFYYRP TVTEAFASVQ YIMTEANFGW LIRSVHRWSA SMMVLMMILH
101: VFRVYLTGGF KKPRELTWVT GVVLGVLTAS FGVTGYSLPW DQIGYWAVKI VTGVPDAIPV IGSPLVELLR GSASVGQSTL TRFYSLHTFV LPLLTAVFML
201: MHFLMIRKQG ISGPL

Arabidopsis Description

PETBCytochrome b6 [Source:UniProtKB/Swiss-Prot;Acc:P56773]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.