Subcellular Localization
min:
: max
Winner_takes_all: endoplasmic reticulum, vacuole
Predictor Summary:
Predictor Summary:
- plastid 1
- cytosol 1
- extracellular 1
- endoplasmic reticulum 2
- vacuole 2
- plasma membrane 1
- golgi 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| HORVU5Hr1G124210.2 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| ATCG00720.1 | HORVU5Hr1G124210.2 | AT4G22890.1 | 18243102 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| HORVU0Hr1G034350.1 | Barley | endoplasmic reticulum, vacuole | 100.0 | 100.0 |
| Solyc01g007540.2.1 | Tomato | plastid | 57.55 | 57.55 |
| GRMZM5G884960_P01 | Maize | plastid | 60.43 | 48.28 |
| CDX71257 | Canola | cytosol, plastid, vacuole | 10.79 | 15.31 |
| HORVU7Hr1G052180.1 | Barley | plastid | 12.23 | 9.88 |
| HORVU1Hr1G063040.1 | Barley | plastid | 12.23 | 9.88 |
| HORVU1Hr1G045710.1 | Barley | extracellular | 5.04 | 9.72 |
| ATCG00720.1 | Thale cress | plasma membrane | 12.95 | 8.37 |
| AGP50784 | Barley | plastid | 12.23 | 7.33 |
| HORVU5Hr1G065020.1 | Barley | golgi, mitochondrion, plasma membrane | 12.23 | 7.33 |
| HORVU6Hr1G049420.1 | Barley | mitochondrion | 12.23 | 7.33 |
| PGSC0003DMT400049986 | Potato | cytosol, extracellular, golgi | 4.32 | 6.9 |
| HORVU2Hr1G062090.1 | Barley | plasma membrane | 10.79 | 6.47 |
| HORVU1Hr1G003510.1 | Barley | extracellular, mitochondrion, peroxisome | 5.76 | 6.4 |
| HORVU0Hr1G037920.1 | Barley | plasma membrane | 7.19 | 5.52 |
| HORVU5Hr1G072320.1 | Barley | golgi, mitochondrion, plasma membrane | 7.91 | 4.35 |
| HORVU1Hr1G009360.1 | Barley | plasma membrane | 8.63 | 4.04 |
| HORVU0Hr1G034150.1 | Barley | golgi, mitochondrion, plasma membrane | 7.91 | 3.87 |
| HORVU7Hr1G044370.1 | Barley | plasma membrane | 7.91 | 3.7 |
| HORVU3Hr1G045040.1 | Barley | cytosol | 5.04 | 3.3 |
| HORVU3Hr1G040840.1 | Barley | plasma membrane | 7.91 | 3.23 |
| GSMUA_AchrUn_... | Banana | mitochondrion | 2.16 | 3.09 |
| BAV58143 | Barley | mitochondrion, plasma membrane | 7.91 | 2.76 |
Protein Annotations
| MapMan:1.1.2.4 | Gene3D:1.10.287.980 | Gene3D:1.20.5.510 | UniProt:A0A287U4I7 | InterPro:Cyt_b/b6_C | InterPro:Cyt_b/b6_C_sf |
| InterPro:Cyt_b6/f_cplx_suIV | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0006091 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009055 | GO:GO:0009579 | GO:GO:0009767 |
| GO:GO:0009987 | GO:GO:0015979 | GO:GO:0016020 | GO:GO:0016021 | GO:GO:0016491 | GO:GO:0042651 |
| GO:GO:0045156 | EnsemblPlantsGene:HORVU6Hr1G049430 | EnsemblPlants:HORVU6Hr1G049430.1 | InterPro:IPR005798 | PFAM:PF00032 | PIRSF:PIRSF000033 |
| PFscan:PS51003 | PANTHER:PTHR19271 | PANTHER:PTHR19271:SF4 | SUPFAM:SSF81648 | TIGRFAMs:TIGR01156 | TMHMM:TMhelix |
| UniParc:UPI0003D51108 | : | : | : | : | : |
Description
No Description!
Coordinates
chrchr6H:+:299534298..299534717
Molecular Weight (calculated)
15284.1 Da
IEP (calculated)
4.605
GRAVY (calculated)
0.724
Length
139 amino acids
Sequence
(BLAST)
(BLAST)
001: MGHNYYGEPA WPNDLLYIFP VVILGTIACN VGLAVLEPSM IGEPADPFAT PLEILPEWYF FPVFQILRTV PNKLLGVLLM VSVPTGLLTV PFLENVNKFQ
101: NPFRRPVATT VFLIGTVVAL WLGIGATLPI DKSLTLGLF
101: NPFRRPVATT VFLIGTVVAL WLGIGATLPI DKSLTLGLF
001: MGVTKKPDLN DPVLRAKLAK GMGHNYYGEP AWPNDLLYIF PVVILGTIAC NVGLAVLEPS MIGEPADPFA TPLEILPEWY FFPVFQILRT VPNKLLGVLL
101: MVSVPAGLLT VPFLENVNKF QNPFRRPVAT TVFLIGTAAA LWLGIGATLP IDKSLTLGLF
101: MVSVPAGLLT VPFLENVNKF QNPFRRPVAT TVFLIGTAAA LWLGIGATLP IDKSLTLGLF
Arabidopsis Description
PETDCytochrome b6-f complex subunit 4 [Source:UniProtKB/Swiss-Prot;Acc:P56774]
SUBAcon: [plasma membrane]
SUBAcon: [plasma membrane]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.