Factsheet for HORVU5Hr1G072320.1

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, plasma membrane, golgi

Predictor Summary:

mitochondrion 2
golgi 1
plasma membrane 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	golgi, mitochondrion, plasma membrane
Any Predictor:	golgi, mitochondrion, plasma membrane
iPSORT:	mitochondrion
MultiLoc:	golgi
Predotar:	mitochondrion
WoLF PSORT:	plasma membrane

PPI

Inferred distinct locusB in Crop

locusB	locations
HORVU1Hr1G075540.3
HORVU2Hr1G071350.1
HORVU2Hr1G076650.1
HORVU3Hr1G019540.2
HORVU3Hr1G098650.1
HORVU5Hr1G109620.2
HORVU6Hr1G051210.7
HORVU7Hr1G058850.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
ATMG00220.1	HORVU1Hr1G075540.3	AT1G51980.1	18189341
ATMG00220.1	HORVU3Hr1G019540.2	AT1G51980.1	18189341
ATMG00220.1	HORVU3Hr1G098650.1	AT3G27240.1	18189341
ATMG00220.1	HORVU7Hr1G058850.1	AT3G27240.1	18189341
ATMG00220.1	HORVU2Hr1G076650.1	AT3G46430.1	18189341
ATMG00220.1	HORVU5Hr1G109620.2	AT4G32470.1	18189341
ATMG00220.1	HORVU2Hr1G071350.1	AT5G13430.1	18189341
ATMG00220.1	HORVU6Hr1G051210.7	AT5G13430.1	18189341
ATMG00220.1	HORVU5Hr1G109620.2	AT5G25450.1	18189341
ATMG00220.1	HORVU3Hr1G098650.1	AT5G40810.1	18189341
ATMG00220.1	HORVU7Hr1G058850.1	AT5G40810.1	18189341
ATMG00220.1	HORVU2Hr1G076650.1	AT5G59613.1	18189341

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
HORVU1Hr1G045710.1	Barley	extracellular	27.67	97.22
TraesCS3A01G188100.1	Wheat	peroxisome, plasma membrane, vacuole	65.22	94.29
HORVU0Hr1G034150.1	Barley	golgi, mitochondrion, plasma membrane	97.23	86.62
HORVU1Hr1G009360.1	Barley	plasma membrane	96.05	81.82
HORVU7Hr1G044370.1	Barley	plasma membrane	93.68	79.8
TraesCS1B01G413000.1	Wheat	mitochondrion	95.65	77.07
HORVU3Hr1G045040.1	Barley	cytosol	58.1	69.34
GRMZM5G884707_P01	Maize	mitochondrion, plasma membrane	96.05	62.63
BAV58143	Barley	mitochondrion, plasma membrane	97.23	61.81
BAC19890	Rice	mitochondrion	96.84	61.71
TraesCS4D01G140500.1	Wheat	mitochondrion, plasma membrane	96.05	61.06
GSMUA_AchrUn_...	Banana	plasma membrane	63.64	60.98
TraesCS2D01G564500.1	Wheat	mitochondrion	90.91	59.59
ATMG00220.1	Thale cress	mitochondrion, plasma membrane	92.49	59.54
AT2G07727.1	Thale cress	mitochondrion, plasma membrane	92.49	59.54
Solyc09g050020.1.1	Tomato	nucleus	84.98	59.07
HORVU3Hr1G040840.1	Barley	plasma membrane	74.31	55.13
KRH57909	Soybean	mitochondrion	75.1	51.91
VIT_03s0110g00200.t01	Wine grape	cytosol	23.32	40.41
HORVU6Hr1G049420.1	Barley	mitochondrion	19.37	21.12
HORVU5Hr1G065020.1	Barley	golgi, mitochondrion, plasma membrane	19.37	21.12
AGP50784	Barley	plastid	19.37	21.12
HORVU2Hr1G062090.1	Barley	plasma membrane	18.18	19.83
HORVU0Hr1G037920.1	Barley	plasma membrane	13.44	18.78
HORVU7Hr1G052180.1	Barley	plastid	11.86	17.44
HORVU1Hr1G063040.1	Barley	plastid	11.86	17.44
HORVU1Hr1G003510.1	Barley	extracellular, mitochondrion, peroxisome	7.11	14.4
HORVU6Hr1G049430.1	Barley	endoplasmic reticulum, vacuole	4.35	7.91
HORVU0Hr1G034350.1	Barley	endoplasmic reticulum, vacuole	4.35	7.91

Protein Annotations

Gene3D:1.20.810.10	MapMan:2.4.3.1	UniProt:A0A287RRD4	InterPro:Cyt_b/b6_C	InterPro:Cyt_b/b6_N	InterPro:Cytb/b6-like_sf
InterPro:Di-haem_cyt_TM	GO:GO:0003674	GO:GO:0003824	GO:GO:0005575	GO:GO:0006091	GO:GO:0008150
GO:GO:0008152	GO:GO:0009055	GO:GO:0009987	GO:GO:0016020	GO:GO:0016021	GO:GO:0016491
GO:GO:0022904	EnsemblPlantsGene:HORVU5Hr1G072320	EnsemblPlants:HORVU5Hr1G072320.1	InterPro:IPR005797	InterPro:IPR005798	InterPro:IPR027387
PFAM:PF00033	PFscan:PS51002	PFscan:PS51003	PANTHER:PTHR19271	PANTHER:PTHR19271:SF5	SUPFAM:SSF81342
TMHMM:TMhelix	UniParc:UPI000B45FA55	SEG:seg	:	:	:

Description

No Description!

Coordinates

chrchr5H:+:535263291..535264482

Molecular Weight (calculated)

28544.1 Da

IEP (calculated)

9.050

GRAVY (calculated)

0.523

Length

253 amino acids

Sequence
(BLAST)

001: MTIRNQRFSL LKQPIYSTLN QHLIDYPTPS NLSYWWGFGS LAGICLVIQI VTGVFLAMRH TPHVDLALNS VEHTMRDVEG GWLLRYMHAN GASMFLIVVH
101: LHIFRGLYHA SYSRPREFVR CLGVVIFLLM IVTAFIGYVP PWGQMRFWGA TVITSLASAI PVVGDTIVTW LWGGFSVDNA TLNRFCSLHH LLPLILVGAS
201: LLHLAALHQY GSNNPLGVHS EMDKIASYPY FYVKDLVGRV ASAIFFSIWI FFS

Best Arabidopsis Sequence Match ( AT2G07727.1 )
(BLAST)

001: MTIRNQRFSL LKQPISSTLN QHLVDYPTPS NLSYWWGFGP LAGICLVIQI VTGVFLAMHY TPHVDLAFNS VEHIMRDVEG GWLLRYMHAN GASMFLIVVY
101: LHIFRGLYHA SYSSPREFVW CLGVVIFLLM IVTAFIGYVL PWGQMSFWGA TVITSLASAI PVVGDTIVTW LWGGFSVDNA TLNRFFSLHH LLPFILVGAS
201: LLHLAALHQY GSNNPLGVHS EMDKIAFYPY FYVKDLVGWV AFAIFFSIWI FYAPNVLGHP DNYIPANPMS TPPHIVPEWY FLPIHAILRS IPDKAGGVAA
301: IAPVFICLLA LPFFKSMYVR SSSFRPIHQG MFWLLLADCL LLGWIGCQPV EAPFVTIGQI SPLVFFLFFA ITPILGRVGR GIPNSYTDET DHT

Arabidopsis Description

Di-haem cytochrome, transmembrane;Cytochrome b/b6, C-terminal [Source:TAIR;Acc:AT2G07727]
SUBAcon: [mitochondrion,plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.