Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion
Predictor Summary:
Predictor Summary:
- plastid 2
- mitochondrion 1
- cytosol 1
- plasma membrane 3
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- golgi 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
| mitochondrion:
28499913
|
msms PMID:
28499913
doi
Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan. Electronic address: ksakata@maebashi-it.ac.jp., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan. Electronic address: komatsu.setsuko.fu@u.tsukuba.ac.jp., King Abdullah University of Science and Technology (KAUST), Computational Bioscience Research Center (CBRC), Thuwal 23955-6900, Saudi Arabia.
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| HORVU1Hr1G045710.1 | Barley | extracellular | 17.76 | 90.28 |
| TraesCS3A01G188100.1 | Wheat | peroxisome, plasma membrane, vacuole | 42.62 | 89.14 |
| HORVU3Hr1G040840.1 | Barley | plasma membrane | 75.96 | 81.52 |
| ATMG00220.1 | Thale cress | mitochondrion, plasma membrane | 83.88 | 78.12 |
| AT2G07727.1 | Thale cress | mitochondrion, plasma membrane | 83.88 | 78.12 |
| GRMZM5G884707_P01 | Maize | mitochondrion, plasma membrane | 80.87 | 76.29 |
| BAC19890 | Rice | mitochondrion | 81.97 | 75.57 |
| BAV58143 | Barley | mitochondrion, plasma membrane | 81.97 | 75.38 |
| TraesCS7A01G237900.1 | Wheat | mitochondrion | 72.13 | 75.21 |
| HORVU5Hr1G072320.1 | Barley | golgi, mitochondrion, plasma membrane | 51.91 | 75.1 |
| TraesCS1B01G413000.1 | Wheat | mitochondrion | 64.21 | 74.84 |
| TraesCS2D01G564500.1 | Wheat | mitochondrion | 78.69 | 74.61 |
| TraesCS4D01G140500.1 | Wheat | mitochondrion, plasma membrane | 80.87 | 74.37 |
| TraesCS7D01G239000.1 | Wheat | mitochondrion | 76.23 | 74.2 |
| TraesCS1A01G112900.1 | Wheat | mitochondrion | 74.32 | 72.92 |
| TraesCS5A01G430300.1 | Wheat | plasma membrane | 39.07 | 72.22 |
| HORVU0Hr1G034150.1 | Barley | golgi, mitochondrion, plasma membrane | 55.74 | 71.83 |
| HORVU1Hr1G009360.1 | Barley | plasma membrane | 54.64 | 67.34 |
| Solyc09g050020.1.1 | Tomato | nucleus | 65.85 | 66.21 |
| HORVU7Hr1G044370.1 | Barley | plasma membrane | 53.28 | 65.66 |
| TraesCS4A01G150300.1 | Wheat | mitochondrion, plasma membrane | 72.95 | 64.03 |
| HORVU3Hr1G045040.1 | Barley | cytosol | 33.06 | 57.08 |
| KRH75043 | Soybean | endoplasmic reticulum, mitochondrion, plastid, vacuole | 6.56 | 20.69 |
| KRH48941 | Soybean | mitochondrion | 4.64 | 9.94 |
Protein Annotations
| Gene3D:1.20.810.10 | MapMan:2.4.3.1 | EMBL:ACUP02003122 | InterPro:Cyt_b/b6_C | InterPro:Cyt_b/b6_C_sf | InterPro:Cyt_b/b6_N |
| InterPro:Cytb/b6-like_sf | InterPro:Cytochrome_b | InterPro:Di-haem_cyt_TM | EnsemblPlantsGene:GLYMA_05G092000 | GO:GO:0003674 | GO:GO:0003824 |
| GO:GO:0005215 | GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 |
| GO:GO:0005739 | GO:GO:0005743 | GO:GO:0006091 | GO:GO:0006122 | GO:GO:0006139 | GO:GO:0006810 |
| GO:GO:0008121 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009055 | GO:GO:0009987 | GO:GO:0016020 |
| GO:GO:0016021 | GO:GO:0016491 | GO:GO:0022904 | GO:GO:0045275 | GO:GO:0046872 | GO:GO:0055114 |
| GO:GO:0070469 | GO:GO:1902600 | InterPro:IPR005797 | InterPro:IPR005798 | InterPro:IPR027387 | UniProt:K7KP66 |
| EnsemblPlants:KRH57909 | ProteinID:KRH57909 | ProteinID:KRH57909.1 | PFAM:PF00032 | PFAM:PF00033 | PIRSF:PIRSF038885 |
| PFscan:PS51002 | PFscan:PS51003 | PANTHER:PTHR19271 | SUPFAM:SSF81342 | SUPFAM:SSF81648 | TMHMM:TMhelix |
| UniParc:UPI000295B4B4 | SEG:seg | : | : | : | : |
Description
hypothetical protein
Coordinates
chr5:+:22226495..22227634
Molecular Weight (calculated)
41225.5 Da
IEP (calculated)
6.729
GRAVY (calculated)
0.601
Length
366 amino acids
Sequence
(BLAST)
(BLAST)
001: PISSTLNQHL IDYPTSSNLS YWWGFGLLAG ICLFIQIVIG IFLAMHYTPH VDLAFNSVEH VMRDVEGGWL LHYMHANGAS IFLIVVHLHI FHGLYHASYS
101: IPREFVRCLE VVIFLLMIVT TFTGYVLPWG QMSFWGAIVI TSLASAIPVV GDTIVTWLWG GFSVDNATLN RFFSLHHLLP FLLVGASHLH LATLHQYGSN
201: NPLGVYSEMD QISFYPYFYV KDLVGWVAFA IFFSIWIFYA LDILGHPDNY IPANPMPTPP HIVPEWYFLP IHAILRSIPN KSGGVAAITP YVLRSSSFCP
301: IHQGIFWLLL ADRLLLGRIG CQPVEAPFVT IGQIPPFVFF LFFVITPILG RVGRGIPNSY TDETNQ
101: IPREFVRCLE VVIFLLMIVT TFTGYVLPWG QMSFWGAIVI TSLASAIPVV GDTIVTWLWG GFSVDNATLN RFFSLHHLLP FLLVGASHLH LATLHQYGSN
201: NPLGVYSEMD QISFYPYFYV KDLVGWVAFA IFFSIWIFYA LDILGHPDNY IPANPMPTPP HIVPEWYFLP IHAILRSIPN KSGGVAAITP YVLRSSSFCP
301: IHQGIFWLLL ADRLLLGRIG CQPVEAPFVT IGQIPPFVFF LFFVITPILG RVGRGIPNSY TDETNQ
001: MTIRNQRFSL LKQPISSTLN QHLVDYPTPS NLSYWWGFGP LAGICLVIQI VTGVFLAMHY TPHVDLAFNS VEHIMRDVEG GWLLRYMHAN GASMFLIVVY
101: LHIFRGLYHA SYSSPREFVW CLGVVIFLLM IVTAFIGYVL PWGQMSFWGA TVITSLASAI PVVGDTIVTW LWGGFSVDNA TLNRFFSLHH LLPFILVGAS
201: LLHLAALHQY GSNNPLGVHS EMDKIAFYPY FYVKDLVGWV AFAIFFSIWI FYAPNVLGHP DNYIPANPMS TPPHIVPEWY FLPIHAILRS IPDKAGGVAA
301: IAPVFICLLA LPFFKSMYVR SSSFRPIHQG MFWLLLADCL LLGWIGCQPV EAPFVTIGQI SPLVFFLFFA ITPILGRVGR GIPNSYTDET DHT
101: LHIFRGLYHA SYSSPREFVW CLGVVIFLLM IVTAFIGYVL PWGQMSFWGA TVITSLASAI PVVGDTIVTW LWGGFSVDNA TLNRFFSLHH LLPFILVGAS
201: LLHLAALHQY GSNNPLGVHS EMDKIAFYPY FYVKDLVGWV AFAIFFSIWI FYAPNVLGHP DNYIPANPMS TPPHIVPEWY FLPIHAILRS IPDKAGGVAA
301: IAPVFICLLA LPFFKSMYVR SSSFRPIHQG MFWLLLADCL LLGWIGCQPV EAPFVTIGQI SPLVFFLFFA ITPILGRVGR GIPNSYTDET DHT
Arabidopsis Description
Di-haem cytochrome, transmembrane;Cytochrome b/b6, C-terminal [Source:TAIR;Acc:AT2G07727]
SUBAcon: [mitochondrion,plasma membrane]
SUBAcon: [mitochondrion,plasma membrane]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.