CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 1
mitochondrion 9

Predictors

GFP

MS/MS

Papers

endoplasmic reticulum: 27224218
mitochondrion: 27780359
endoplasmic reticulum: 28499913
mitochondrion: 28499913
nucleus: 28499913

msms PMID: 27780359 doi

G Mustafa, S Komatsu

Graduate School of Life and Environmental Science, University of Tsukuba , Tsukuba 305-8572, Japan., National Institute of Crop Science, National Agriculture and Food Research Organization , Tsukuba 305-8518, Japan.

msms PMID: 28499913 doi

S Komatsu, X Wang, X Yin, Y Nanjo, H Ohyanagi, K Sakata

Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan. Electronic address: ksakata@maebashi-it.ac.jp., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan. Electronic address: komatsu.setsuko.fu@u.tsukuba.ac.jp., King Abdullah University of Science and Technology (KAUST), Computational Bioscience Research Center (CBRC), Thuwal 23955-6900, Saudi Arabia.

msms PMID: 27224218 doi

X Wang, S Komatsu

Graduate School of Life and Environmental Sciences, University of Tsukuba , Tsukuba 305-8572, Japan., National Institute of Crop Science, National Agriculture and Food Research Organization , Tsukuba 305-8518, Japan.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRG94326	Soybean	mitochondrion	96.43	96.74
Solyc02g093900.2.1	Tomato	nucleus, plastid	81.49	93.31
HORVU3Hr1G098650.1	Barley	cytosol, peroxisome, plastid	59.74	92.46
Bra025544.1-P	Field mustard	cytosol	24.03	90.24
GSMUA_AchrUn_...	Banana	endoplasmic reticulum, extracellular, mitochondrion, plastid	11.04	89.47
KRH07017	Soybean	mitochondrion	87.66	87.95
KRG94438	Soybean	mitochondrion	87.01	87.3
PGSC0003DMT400052104	Potato	mitochondrion	85.71	85.16
AT5G40810.1	Thale cress	mitochondrion	82.79	83.06
AT3G27240.1	Thale cress	mitochondrion	82.79	83.06
CDY34168	Canola	mitochondrion	82.47	82.74
Bra032991.1-P	Field mustard	mitochondrion	82.47	82.74
Os05t0301700-01	Rice	mitochondrion	81.49	82.57
CDY28482	Canola	mitochondrion	82.14	82.41
CDY13693	Canola	mitochondrion	82.14	82.41
Bra039089.1-P	Field mustard	mitochondrion	82.14	82.41
KXG25408	Sorghum	mitochondrion	81.17	82.24
TraesCS7D01G277900.1	Wheat	mitochondrion	81.17	82.24
TraesCS7A01G278100.1	Wheat	golgi, unclear	81.17	82.24
TraesCS7B01G175500.1	Wheat	mitochondrion	80.84	81.91
Zm00001d049959_P001	Maize	mitochondrion	81.49	81.76
VIT_14s0171g00330.t01	Wine grape	mitochondrion	82.14	81.61
HORVU7Hr1G058850.1	Barley	mitochondrion	80.52	81.58
Os01t0935700-02	Rice	mitochondrion	79.55	80.59
TraesCS3D01G451000.1	Wheat	mitochondrion	79.22	79.48
TraesCS3A01G458200.1	Wheat	cytosol, endoplasmic reticulum, mitochondrion	79.55	76.32
Bra025260.1-P	Field mustard	mitochondrion	73.05	74.01
GSMUA_AchrUn_...	Banana	endoplasmic reticulum, extracellular, vacuole	30.84	69.85
CDY20058	Canola	plastid	82.14	69.51
CDX83670	Canola	mitochondrion	82.14	68.01
Zm00001d031967_P001	Maize	cytosol, endoplasmic reticulum, peroxisome	80.19	67.49
CDY00164	Canola	endoplasmic reticulum	82.14	66.75
GSMUA_AchrUn_...	Banana	cytosol, mitochondrion	21.43	58.41
CDY36384	Canola	plastid	37.66	56.86
GSMUA_Achr5P17710_001	Banana	cytosol	40.58	51.02

Protein Annotations

Gene3D:1.10.760.10	Gene3D:1.20.5.100	EntrezGene:100796742	MapMan:2.4.3.2	EMBL:ACUP02002872	InterPro:Cyt_c-like_dom
InterPro:Cyt_c-like_dom_sf	InterPro:Cyt_c1	InterPro:Cyt_c1_TM_anchor_C	EnsemblPlantsGene:GLYMA_05G074400	GO:GO:0003674	GO:GO:0003824
GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005739
GO:GO:0005750	GO:GO:0006091	GO:GO:0006122	GO:GO:0006139	GO:GO:0006810	GO:GO:0008150
GO:GO:0008152	GO:GO:0009055	GO:GO:0009058	GO:GO:0009987	GO:GO:0016020	GO:GO:0020037
GO:GO:0042776	GO:GO:0045153	GO:GO:0045155	GO:GO:0046872	UniProt:I1K146	InterPro:IPR009056
InterPro:IPR036909	EnsemblPlants:KRH57638	ProteinID:KRH57638	ProteinID:KRH57638.1	PFAM:PF02167	PRINTS:PR00603
PFscan:PS51007	PANTHER:PTHR10266	PANTHER:PTHR10266:SF6	SUPFAM:SSF46626	SUPFAM:SSF81496	UniParc:UPI00023C4E58
SEG:seg	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr5:-:8765437..8777315

Molecular Weight (calculated)

33908.4 Da

IEP (calculated)

7.251

GRAVY (calculated)

-0.210

Length

308 amino acids

Sequence
(BLAST)

001: MAGGVIRQLF RRKLQSHSPQ NSSFKSFIIT KKDGADSIGN NSLRVLALVG AGVSGFLGFA TTAFADEAEH GLACPSYPWP HKGILSSYDH ASIRRGHQVY
101: QEVCASCHSM SLISYRDLVG VAYTEEEVKA MAAEIEVVDG PNDEGEMFTR PGKLSDRFPQ PYANEAAARF ANGGAYPPDL SLVTKARHNG QNYVFALLTG
201: YRDPPAGVSI REGLHYNPYF PGGAIAMPKM LNDGAVEYED GTPATESQMG KDIVSFLTWA AEPEMEERKL MGFKWIFVLS LALLQAAYYR RLRWSVLKSR
301: KLVLDVVN

Best Arabidopsis Sequence Match ( AT3G27240.1 )
(BLAST)

001: MVGGGVIQQI LRRKLHSQSL ATPVLSWFSS KKAHEDAGSS GVRALALLGA GVTGLLSFST VASADEAEHG LESPEYPWPH DGILSSYDHA SIRRGHQVYQ
101: QVCASCHSMS LISYRDLVGV AYTEEEAKAM AAEIEVVDGP NDEGEMFTRP GKLSDRFPQP YANESAARFA NGGAYPPDLS LITKARHNGP NYVFALLTGY
201: RDPPAGISIR EGLHYNPYFP GGAIAMPKML NDEAVEYEDG VPATEAQMGK DIVSFLAWAA EPEMEERKLM GFKWIFLLSL ALLQAAYYRR LKWSVLKSRK
301: LVLDVVN

Arabidopsis Description

CYC11Cytochrome c1 1, heme protein, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q9LK29]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.