Subcellular Localization
min:
: max
Winner_takes_all: extracellular, endoplasmic reticulum, vacuole
Predictor Summary:
Predictor Summary:
- plastid 1
- mitochondrion 2
- endoplasmic reticulum 4
- extracellular 4
- golgi 3
- plasma membrane 3
- vacuole 4
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| GSMUA_AchrUn_... |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT5G40810.1 | GSMUA_AchrUn_... | ATMG00960.1 | 18644794 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| GSMUA_Achr1P09720_001 | Banana | mitochondrion | 76.47 | 34.1 |
| Solyc02g093900.2.1 | Tomato | nucleus, plastid | 64.71 | 32.71 |
| VIT_14s0171g00330.t01 | Wine grape | mitochondrion | 72.79 | 31.94 |
| KRG94326 | Soybean | mitochondrion | 72.06 | 31.92 |
| KRH57638 | Soybean | mitochondrion | 69.85 | 30.84 |
| GSMUA_Achr7P05470_001 | Banana | mitochondrion | 69.85 | 30.74 |
| AT5G40810.1 | Thale cress | mitochondrion | 69.12 | 30.62 |
| Bra032991.1-P | Field mustard | mitochondrion | 68.38 | 30.29 |
| AT3G27240.1 | Thale cress | mitochondrion | 68.38 | 30.29 |
| Bra039089.1-P | Field mustard | mitochondrion | 68.38 | 30.29 |
| CDY34168 | Canola | mitochondrion | 68.38 | 30.29 |
| VIT_09s0002g05950.t01 | Wine grape | endoplasmic reticulum, golgi | 69.85 | 30.06 |
| CDY28482 | Canola | mitochondrion | 67.65 | 29.97 |
| GSMUA_Achr1P18150_001 | Banana | mitochondrion | 67.65 | 29.97 |
| PGSC0003DMT400052104 | Potato | mitochondrion | 67.65 | 29.68 |
| KRH07017 | Soybean | mitochondrion | 66.91 | 29.64 |
| KRG94438 | Soybean | mitochondrion | 66.91 | 29.64 |
| Bra025260.1-P | Field mustard | mitochondrion | 66.18 | 29.61 |
| CDY13693 | Canola | mitochondrion | 66.18 | 29.32 |
| PGSC0003DMT400073387 | Potato | mitochondrion | 68.38 | 29.06 |
| Solyc06g067920.2.1 | Tomato | endoplasmic reticulum, nucleus, unclear | 68.38 | 29.06 |
| Solyc12g042920.1.1 | Tomato | nucleus | 68.38 | 28.7 |
| PGSC0003DMT400073726 | Potato | mitochondrion | 67.65 | 28.4 |
| CDY20058 | Canola | plastid | 68.38 | 25.55 |
| CDY00164 | Canola | endoplasmic reticulum | 68.38 | 24.54 |
| CDX83670 | Canola | mitochondrion | 66.91 | 24.46 |
| GSMUA_Achr5P17710_001 | Banana | cytosol | 31.62 | 17.55 |
| CDY36384 | Canola | plastid | 7.35 | 4.9 |
| GSMUA_AchrUn_... | Banana | cytosol, mitochondrion | 0.0 | 0.0 |
| GSMUA_AchrUn_... | Banana | endoplasmic reticulum, extracellular, mitochondrion, plastid | 0.0 | 0.0 |
| Bra025544.1-P | Field mustard | cytosol | 0.0 | 0.0 |
Protein Annotations
| Gene3D:1.10.760.10 | MapMan:2.4.3.2 | InterPro:Cyt_c-like_dom | InterPro:Cyt_c-like_dom_sf | InterPro:Cyt_c1 | GO:GO:0003674 |
| GO:GO:0003824 | GO:GO:0005488 | GO:GO:0006091 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009055 |
| GO:GO:0009987 | GO:GO:0020037 | GO:GO:0022900 | GO:GO:0046872 | EnsemblPlantsGene:GSMUA_AchrUn_randomG23270_001 | EnsemblPlants:GSMUA_AchrUn_randomP23270_001 |
| EnsemblPlants:GSMUA_AchrUn_randomT23270_001 | InterPro:IPR009056 | InterPro:IPR036909 | UniProt:M0UBN5 | PFAM:PF02167 | PRINTS:PR00603 |
| PFscan:PS51007 | PANTHER:PTHR10266 | PANTHER:PTHR10266:SF6 | SUPFAM:SSF46626 | SignalP:SignalP-TM | UniParc:UPI0002952AE9 |
Description
Cytochrome c1-1, heme protein, mitochondrial [Source:GMGC_GENE;Acc:GSMUA_AchrUn_randomG23270_001]
Coordinates
chrchrUn_random:-:113677548..113678328
Molecular Weight (calculated)
14713.5 Da
IEP (calculated)
4.516
GRAVY (calculated)
0.154
Length
136 amino acids
Sequence
(BLAST)
(BLAST)
001: MLFLFIFYMQ ASSLVSSIRQ EDAVGSSTME SLRLRVLALV GAGISGILSF ATIASADEAE HGLPAPSYPW PHKGILSSYD HASIRRGHQV YQQVCASCHS
101: MSLISYRDLV GVAYTEEETI AMASEIEVVD GPNDEG
101: MSLISYRDLV GVAYTEEETI AMASEIEVVD GPNDEG
001: MVGGGVIRQL LRRKLHSQSV ATPVLSWLSS KKANEDAGSA GLRAFALMGA GITGLLSFST VASADEAEHG LECPNYPWPH EGILSSYDHA SIRRGHQVYQ
101: QVCASCHSMS LISYRDLVGV AYTEEEAKAM AAEIEVVDGP NDEGEMFTRP GKLSDRLPEP YSNESAARFA NGGAYPPDLS LVTKARHNGQ NYVFALLTGY
201: RDPPAGISIR EGLHYNPYFP GGAIAMPKML NDEAVEYEDG TPATEAQMGK DVVSFLSWAA EPEMEERKLM GFKWIFLLSL ALLQAAYYRR LKWSVLKSRK
301: LVLDVVN
101: QVCASCHSMS LISYRDLVGV AYTEEEAKAM AAEIEVVDGP NDEGEMFTRP GKLSDRLPEP YSNESAARFA NGGAYPPDLS LVTKARHNGQ NYVFALLTGY
201: RDPPAGISIR EGLHYNPYFP GGAIAMPKML NDEAVEYEDG TPATEAQMGK DVVSFLSWAA EPEMEERKLM GFKWIFLLSL ALLQAAYYRR LKWSVLKSRK
301: LVLDVVN
Arabidopsis Description
CYC12Cytochrome c1 2, heme protein, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q9FKS5]
SUBAcon: [mitochondrion]
SUBAcon: [mitochondrion]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.