Factsheet for GSMUA_AchrUn_randomP23260_001

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, cytosol

Predictor Summary:

nucleus 1
mitochondrion 6
cytosol 2

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_AchrUn_...

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G40810.1	GSMUA_AchrUn_...	ATMG00960.1	18644794

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc02g093900.2.1	Tomato	nucleus, plastid	60.18	25.28
GSMUA_Achr7P05470_001	Banana	mitochondrion	60.18	22.01
GSMUA_Achr1P09720_001	Banana	mitochondrion	59.29	21.97
VIT_14s0171g00330.t01	Wine grape	mitochondrion	60.18	21.94
PGSC0003DMT400052104	Potato	mitochondrion	60.18	21.94
VIT_09s0002g05950.t01	Wine grape	endoplasmic reticulum, golgi	61.06	21.84
KRG94438	Soybean	mitochondrion	59.29	21.82
KRH07017	Soybean	mitochondrion	59.29	21.82
GSMUA_Achr1P18150_001	Banana	mitochondrion	59.29	21.82
Bra032991.1-P	Field mustard	mitochondrion	58.41	21.5
Bra039089.1-P	Field mustard	mitochondrion	58.41	21.5
CDY13693	Canola	mitochondrion	58.41	21.5
CDY28482	Canola	mitochondrion	58.41	21.5
CDY34168	Canola	mitochondrion	58.41	21.5
KRH57638	Soybean	mitochondrion	58.41	21.43
Solyc06g067920.2.1	Tomato	endoplasmic reticulum, nucleus, unclear	60.18	21.25
AT5G40810.1	Thale cress	mitochondrion	57.52	21.17
KRG94326	Soybean	mitochondrion	57.52	21.17
AT3G27240.1	Thale cress	mitochondrion	57.52	21.17
PGSC0003DMT400073387	Potato	mitochondrion	59.29	20.94
Solyc12g042920.1.1	Tomato	nucleus	59.29	20.68
Bra025260.1-P	Field mustard	mitochondrion	54.87	20.39
PGSC0003DMT400073726	Potato	mitochondrion	58.41	20.37
CDY20058	Canola	plastid	58.41	18.13
CDX83670	Canola	mitochondrion	58.41	17.74
CDY00164	Canola	endoplasmic reticulum	59.29	17.68
GSMUA_Achr5P17710_001	Banana	cytosol	29.2	13.47
CDY36384	Canola	plastid	23.01	12.75
GSMUA_AchrUn_...	Banana	endoplasmic reticulum, extracellular, mitochondrion, plastid	3.54	10.53
Bra025544.1-P	Field mustard	cytosol	6.19	8.54
GSMUA_AchrUn_...	Banana	endoplasmic reticulum, extracellular, vacuole	0.0	0.0

Protein Annotations

Gene3D:1.10.760.10	MapMan:2.4.3.2	InterPro:Cyt_c-like_dom_sf	InterPro:Cyt_c1	GO:GO:0003674	GO:GO:0003824
GO:GO:0005488	GO:GO:0006091	GO:GO:0008150	GO:GO:0008152	GO:GO:0009055	GO:GO:0009987
GO:GO:0020037	GO:GO:0022900	EnsemblPlantsGene:GSMUA_AchrUn_randomG23260_001	EnsemblPlants:GSMUA_AchrUn_randomP23260_001	EnsemblPlants:GSMUA_AchrUn_randomT23260_001	InterPro:IPR036909
UniProt:M0UBN4	PFAM:PF02167	PANTHER:PTHR10266	PANTHER:PTHR10266:SF6	SUPFAM:SSF46626	UniParc:UPI000295DC7E

Description

Hypothetical protein [Source:GMGC_GENE;Acc:GSMUA_AchrUn_randomG23260_001]

Coordinates

chrchrUn_random:-:113676738..113677547

Molecular Weight (calculated)

12551.1 Da

IEP (calculated)

8.718

GRAVY (calculated)

0.126

Length

113 amino acids

Sequence
(BLAST)

001: MFTRPGKLSD RFPQPYSNEQ AARFANGGVY PPDLSLISKA RHNGQNYVFA LLTGYRDPPA GVLVRFQITI NALVVANLVS TFSCFHLHEH VTLFVTLLSA
101: TPLDLSSYIC NLH

Best Arabidopsis Sequence Match ( AT5G40810.2 )
(BLAST)

001: MGAGITGLLS FSTVASADEA EHGLECPNYP WPHEGILSSY DHASIRRGHQ VYQQVCASCH SMSLISYRDL VGVAYTEEEA KAMAAEIEVV DGPNDEGEMF
101: TRPGKLSDRL PEPYSNESAA RFANGGAYPP DLSLVTKARH NGQNYVFALL TGYRDPPAGI SIREGLHYNP YFPGGAIAMP KMLNDEAVEY EDGTPATEAQ
201: MGKDVVSFLS WAAEPEMEER KLMGFKWIFL LSLALLQAAY YRRLKWSVLK SRKLVLDVVN

Arabidopsis Description

CYC12Cytochrome c1 2, heme protein, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q9FKS5]
SUBAcon: [peroxisome,plastid,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.