CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 3
mitochondrion 5

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY34168	Canola	mitochondrion	98.05	98.05
AT3G27240.1	Thale cress	mitochondrion	95.77	95.77
CDY13693	Canola	mitochondrion	95.77	95.77
HORVU3Hr1G098650.1	Barley	cytosol, peroxisome, plastid	61.24	94.47
Solyc02g093900.2.1	Tomato	nucleus, plastid	79.8	91.08
GSMUA_AchrUn_...	Banana	endoplasmic reticulum, extracellular, mitochondrion, plastid	11.07	89.47
KRG94438	Soybean	mitochondrion	85.34	85.34
KXG25408	Sorghum	mitochondrion	84.04	84.87
KRH07017	Soybean	mitochondrion	84.69	84.69
Os05t0301700-01	Rice	mitochondrion	83.39	84.21
PGSC0003DMT400052104	Potato	mitochondrion	84.69	83.87
Zm00001d049959_P001	Maize	mitochondrion	83.39	83.39
TraesCS7D01G277900.1	Wheat	mitochondrion	82.41	83.22
TraesCS7B01G175500.1	Wheat	mitochondrion	82.41	83.22
TraesCS7A01G278100.1	Wheat	golgi, unclear	82.41	83.22
VIT_14s0171g00330.t01	Wine grape	mitochondrion	83.39	82.58
HORVU7Hr1G058850.1	Barley	mitochondrion	81.43	82.24
Os01t0935700-02	Rice	mitochondrion	81.43	82.24
KRH57638	Soybean	mitochondrion	82.41	82.14
KRG94326	Soybean	mitochondrion	81.76	81.76
TraesCS3D01G451000.1	Wheat	mitochondrion	81.11	81.11
CDY20058	Canola	plastid	95.44	80.49
CDX83670	Canola	mitochondrion	96.74	79.84
CDY00164	Canola	endoplasmic reticulum	95.77	77.57
TraesCS3A01G458200.1	Wheat	cytosol, endoplasmic reticulum, mitochondrion	80.78	77.26
Zm00001d031967_P001	Maize	cytosol, endoplasmic reticulum, peroxisome	81.11	68.03
GSMUA_AchrUn_...	Banana	endoplasmic reticulum, extracellular, vacuole	29.97	67.65
CDY36384	Canola	plastid	40.39	60.78
GSMUA_AchrUn_...	Banana	cytosol, mitochondrion	21.5	58.41
GSMUA_Achr5P17710_001	Banana	cytosol	40.72	51.02

Protein Annotations

Gene3D:1.10.760.10	Gene3D:1.20.5.100	MapMan:2.4.3.2	GO:A0A078GTN8	UniProt:A0A078GTN8	EnsemblPlants:CDY28482
ProteinID:CDY28482	ProteinID:CDY28482.1	InterPro:Cyt_c-like_dom	InterPro:Cyt_c-like_dom_sf	InterPro:Cyt_c1	InterPro:Cyt_c1_TM_anchor_C
GO:GO:0003674	GO:GO:0003824	GO:GO:0005488	GO:GO:0006091	GO:GO:0008150	GO:GO:0008152
GO:GO:0009055	GO:GO:0009987	GO:GO:0020037	GO:GO:0022900	GO:GO:0046872	EnsemblPlantsGene:GSBRNA2T00040379001
InterPro:IPR009056	InterPro:IPR036909	PFAM:PF02167	PRINTS:PR00603	PFscan:PS51007	PANTHER:PTHR10266
PANTHER:PTHR10266:SF6	SUPFAM:SSF46626	SUPFAM:SSF81496	UniParc:UPI0004EF1908	SEG:seg	:

Description

BnaC02g36780DBnaC02g36780D protein [Source:UniProtKB/TrEMBL;Acc:A0A078GTN8]

Coordinates

chrLK032221:+:10682..12957

Molecular Weight (calculated)

33630.1 Da

IEP (calculated)

6.240

GRAVY (calculated)

-0.137

Length

307 amino acids

Sequence
(BLAST)

001: MVGGGFIQQI LRRKLHSQSL ATPVLSLFAS KKVHEDAASS GVRALALLGA GVTGLFSFST VASADEAEHG LACPDYPWPH DGILSSYDHA SIRRGHQVYQ
101: QVCASCHSMS LISYRDLVGV AYTEEEAKAM AAEIEVVDGP NDEGEMFTRP GKLSDRLPQP YANESAARFA NGGAYPPDLS LITKARHNGQ NYVFALLTGY
201: RDPPAGISIR EGLHYNPYFP GGAIAMPKML NDEAVEYEDG VPATEAQMGK DVVSFLSWAA EPEMEERKLM GFKWIFLLSL ALLQAAYYRR LKWSVLKSRK
301: LVLDVVN

Best Arabidopsis Sequence Match ( AT3G27240.1 )
(BLAST)

001: MVGGGVIQQI LRRKLHSQSL ATPVLSWFSS KKAHEDAGSS GVRALALLGA GVTGLLSFST VASADEAEHG LESPEYPWPH DGILSSYDHA SIRRGHQVYQ
101: QVCASCHSMS LISYRDLVGV AYTEEEAKAM AAEIEVVDGP NDEGEMFTRP GKLSDRFPQP YANESAARFA NGGAYPPDLS LITKARHNGP NYVFALLTGY
201: RDPPAGISIR EGLHYNPYFP GGAIAMPKML NDEAVEYEDG VPATEAQMGK DIVSFLAWAA EPEMEERKLM GFKWIFLLSL ALLQAAYYRR LKWSVLKSRK
301: LVLDVVN

Arabidopsis Description

CYC11Cytochrome c1 1, heme protein, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q9LK29]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.