Factsheet for Os05t0301700-01

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 1
mitochondrion 9

Predictors

GFP

MS/MS

Papers

mitochondrion: 19010998
plastid: 21433289
mitochondrion: 23027867
plasma membrane: 27800704
plastid: 27992503

msms PMID: 23027867 doi

G Liu, H Tian, YQ Huang, J Hu, YX Ji, SQ Li, YQ Feng, L Guo, YG Zhu

State Key Laboratory of Hybrid Rice, College of Life Sciences, Wuhan University, Wuhan 430072, China.

msms PMID: 27800704 doi

J Cao, C Yang, L Li, L Jiang, Y Wu, C Wu, Q Bu, G Xia, X Liu, Y Luo, J Liu

Huai'an Institute of Agricultural Sciences, Huai'an, 223001, China., Institute of Analytical Chemistry and Synthetic and Functional Biomolecules Center, College of Chemistry and Molecular Engineering, Peking University, Beijing, 100871, China; and., Northeast Institute of Geography and Agroecology, Key Laboratory of Soybean Molecular Design Breeding, Chinese Academy of Sciences, Harbin, 150081, China., State Key Laboratory of Plant Genomics, Institute of Microbiology, Chinese Academy of Sciences, Beijing, 100101, China.

msms PMID: 19010998 doi

S Huang, NL Taylor, R Narsai, H Eubel, J Whelan, AH Millar

Australian Research Council Centre of Excellence in Plant Energy Biology, M316, University of Western Australia, Crawley, 6009 Western Australia, Australia.

msms PMID: 27992503 doi

S Xing, X Meng, L Zhou, H Mujahid, C Zhao, Y Zhang, C Wang, Z Peng

Department of Biochemistry, Molecular Biology, Entomology and Plant Pathology, Mississippi State University, Starkville, Mississippi, United States of America., Institute of Food Crops, Jiangsu Academy of Agricultural Sciences, Jiangsu High Quality Rice Research and Development Center, Nanjing Branch of China National Center for Rice Improvement, Nanjing, Jiangsu, China.

msms PMID: 21433289 doi

S Reiland, J Grossmann, K Baerenfaller, P Gehrig, A Nunes-Nesi, AR Fernie, W Gruissem, S Baginsky

Department of Biology, Plant Biotechnology, ETH Zurich, Zurich, Switzerland.

PPI

Inferred distinct locusB in Crop

locusB	locations
BAC19893

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G40810.1	BAC19893	ATMG00960.1	18644794

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS7D01G277900.1	Wheat	mitochondrion	96.71	96.71
TraesCS7A01G278100.1	Wheat	golgi, unclear	96.71	96.71
KXG25408	Sorghum	mitochondrion	96.38	96.38
TraesCS7B01G175500.1	Wheat	mitochondrion	96.05	96.05
HORVU7Hr1G058850.1	Barley	mitochondrion	95.39	95.39
Zm00001d049959_P001	Maize	mitochondrion	95.72	94.79
Bra025544.1-P	Field mustard	cytosol	24.67	91.46
Solyc02g093900.2.1	Tomato	nucleus, plastid	79.93	90.33
Os01t0935700-02	Rice	mitochondrion	88.82	88.82
VIT_14s0171g00330.t01	Wine grape	mitochondrion	86.18	84.52
AT5G40810.1	Thale cress	mitochondrion	84.54	83.71
Bra032991.1-P	Field mustard	mitochondrion	84.54	83.71
CDY34168	Canola	mitochondrion	84.54	83.71
GSMUA_Achr1P09720_001	Banana	mitochondrion	83.88	83.61
GSMUA_Achr1P18150_001	Banana	mitochondrion	84.21	83.39
CDY28482	Canola	mitochondrion	84.21	83.39
KRG94438	Soybean	mitochondrion	84.21	83.39
Bra039089.1-P	Field mustard	mitochondrion	84.21	83.39
AT3G27240.1	Thale cress	mitochondrion	83.88	83.06
CDY13693	Canola	mitochondrion	83.88	83.06
KRH07017	Soybean	mitochondrion	83.55	82.74
GSMUA_Achr7P05470_001	Banana	mitochondrion	83.88	82.52
KRG94326	Soybean	mitochondrion	82.57	81.76
KRH57638	Soybean	mitochondrion	82.57	81.49
PGSC0003DMT400052104	Potato	mitochondrion	82.89	81.29
Solyc06g067920.2.1	Tomato	endoplasmic reticulum, nucleus, unclear	82.57	78.44
PGSC0003DMT400073387	Potato	mitochondrion	82.57	78.44
VIT_09s0002g05950.t01	Wine grape	endoplasmic reticulum, golgi	80.92	77.85
Solyc12g042920.1.1	Tomato	nucleus	81.91	76.85
PGSC0003DMT400073726	Potato	mitochondrion	81.25	76.23
Zm00001d031967_P001	Maize	cytosol, endoplasmic reticulum, peroxisome	91.12	75.68
Bra025260.1-P	Field mustard	mitochondrion	74.34	74.34
CDY20058	Canola	plastid	84.21	70.33
CDX83670	Canola	mitochondrion	83.88	68.55
CDY00164	Canola	endoplasmic reticulum	83.88	67.28
CDY36384	Canola	plastid	39.14	58.33

Protein Annotations

Gene3D:1.10.760.10	Gene3D:1.20.5.100	MapMan:2.4.3.2	EntrezGene:4338350	EMBL:AK070578	ProteinID:BAF17050.1
ProteinID:BAS93230.1	InterPro:Cyt_c-like_dom	InterPro:Cyt_c-like_dom_sf	InterPro:Cyt_c1	InterPro:Cyt_c1_TM_anchor_C	GO:GO:0003674
GO:GO:0003824	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0005739	GO:GO:0005750	GO:GO:0006091	GO:GO:0006122	GO:GO:0006139	GO:GO:0006810
GO:GO:0008150	GO:GO:0008152	GO:GO:0009055	GO:GO:0009058	GO:GO:0009987	GO:GO:0016020
GO:GO:0020037	GO:GO:0022900	GO:GO:0042776	GO:GO:0045153	GO:GO:0045155	GO:GO:0046872
InterPro:IPR009056	InterPro:IPR036909	EnsemblPlantsGene:Os05g0301700	EnsemblPlants:Os05t0301700-01	PFAM:PF02167	PRINTS:PR00603
PFscan:PS51007	PANTHER:PTHR10266	PANTHER:PTHR10266:SF6	UniProt:Q0DJC3	SUPFAM:SSF46626	SUPFAM:SSF81496
UniParc:UPI0000E1241B	RefSeq:XP_015640451.1	RefSeq:XP_015640452.1	SEG:seg	:	:

Description

Similar to Cytochrome c1 (Fragment). (Os05t0301700-01)

Coordinates

chr5:-:13543055..13547500

Molecular Weight (calculated)

33295.7 Da

IEP (calculated)

6.607

GRAVY (calculated)

-0.188

Length

304 amino acids

Sequence
(BLAST)

001: MAAGRGINQL LRRTLHNQSS GSSLLSSFRI KHEESSAGLR ALALLGVGAS GLLSFATIAS ADEAEHGLAA AEYPWPHAGI LSSYDHASIR RGHQVYTQVC
101: ASCHSMSLIS YRDLVGVAYT EEETKAMAAE IEVVDGPNDE GEMFTRPGKL SDRFPQPYPN EQAARFANGG AYPPDLSLIT KARHNGQNYV FALLTGYRDP
201: PAGVQIREGL HYNPYFPGGA IAMPKMLIDG AVEYEDGTPA TEAQMGKDVV SFLSWAAEPE MEERKLMGVK WIFLLSLALL QAAYYRRMRW SVLKSRKLVL
301: DVVN

Best Arabidopsis Sequence Match ( AT3G27240.1 )
(BLAST)

001: MVGGGVIQQI LRRKLHSQSL ATPVLSWFSS KKAHEDAGSS GVRALALLGA GVTGLLSFST VASADEAEHG LESPEYPWPH DGILSSYDHA SIRRGHQVYQ
101: QVCASCHSMS LISYRDLVGV AYTEEEAKAM AAEIEVVDGP NDEGEMFTRP GKLSDRFPQP YANESAARFA NGGAYPPDLS LITKARHNGP NYVFALLTGY
201: RDPPAGISIR EGLHYNPYFP GGAIAMPKML NDEAVEYEDG VPATEAQMGK DIVSFLAWAA EPEMEERKLM GFKWIFLLSL ALLQAAYYRR LKWSVLKSRK
301: LVLDVVN

Arabidopsis Description

CYC11Cytochrome c1 1, heme protein, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q9LK29]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.