CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum

Predictor Summary:

plastid 2
endoplasmic reticulum 3
extracellular 2
vacuole 2
plasma membrane 2
golgi 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	endoplasmic reticulum
Any Predictor:	mitochondrion, plastid, secretory
BaCelLo:	plastid
MultiLoc:	endoplasmic reticulum
Predotar:	secretory
PProwler:	secretory
WoLF PSORT:	plastid
YLoc:	mitochondrion

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY13693	Canola	mitochondrion	78.1	96.42
CDY28482	Canola	mitochondrion	77.57	95.77
CDY34168	Canola	mitochondrion	77.57	95.77
AT3G27240.1	Thale cress	mitochondrion	77.04	95.11
HORVU3Hr1G098650.1	Barley	cytosol, peroxisome, plastid	49.34	93.97
Solyc02g093900.2.1	Tomato	nucleus, plastid	64.64	91.08
CDY20058	Canola	plastid	87.07	90.66
GSMUA_AchrUn_...	Banana	endoplasmic reticulum, extracellular, mitochondrion, plastid	8.97	89.47
KRG94438	Soybean	mitochondrion	68.34	84.36
KXG25408	Sorghum	mitochondrion	67.55	84.21
KRH07017	Soybean	mitochondrion	68.07	84.04
Os05t0301700-01	Rice	mitochondrion	67.28	83.88
PGSC0003DMT400052104	Potato	mitochondrion	68.6	83.87
TraesCS7A01G278100.1	Wheat	golgi, unclear	66.49	82.89
TraesCS7B01G175500.1	Wheat	mitochondrion	66.49	82.89
TraesCS7D01G277900.1	Wheat	mitochondrion	66.49	82.89
Zm00001d049959_P001	Maize	mitochondrion	67.02	82.74
KRG94326	Soybean	mitochondrion	66.75	82.41
VIT_14s0171g00330.t01	Wine grape	mitochondrion	67.28	82.26
Os01t0935700-02	Rice	mitochondrion	65.96	82.24
KRH57638	Soybean	mitochondrion	66.75	82.14
CDX83670	Canola	mitochondrion	80.47	81.99
HORVU7Hr1G058850.1	Barley	mitochondrion	65.7	81.91
TraesCS3D01G451000.1	Wheat	mitochondrion	65.96	81.43
TraesCS3A01G458200.1	Wheat	cytosol, endoplasmic reticulum, mitochondrion	65.7	77.57
GSMUA_AchrUn_...	Banana	endoplasmic reticulum, extracellular, vacuole	24.54	68.38
Zm00001d031967_P001	Maize	cytosol, endoplasmic reticulum, peroxisome	65.44	67.76
CDY36384	Canola	plastid	32.72	60.78
GSMUA_AchrUn_...	Banana	cytosol, mitochondrion	17.68	59.29
GSMUA_Achr5P17710_001	Banana	cytosol	32.98	51.02

Protein Annotations

Gene3D:1.10.760.10	Gene3D:1.20.5.100	MapMan:2.4.3.2	GO:A0A078EHB1	EnsemblPlants:CDY00164	ProteinID:CDY00164
ProteinID:CDY00164.1	InterPro:Cyt_c-like_dom	InterPro:Cyt_c-like_dom_sf	InterPro:Cyt_c1	InterPro:Cyt_c1_TM_anchor_C	GO:GO:0003674
GO:GO:0003824	GO:GO:0005488	GO:GO:0009055	GO:GO:0020037	EnsemblPlantsGene:GSBRNA2T00109681001	InterPro:IPR009056
InterPro:IPR036909	PFAM:PF02167	PRINTS:PR00603	PFscan:PS51007	PANTHER:PTHR10266	PANTHER:PTHR10266:SF6
SUPFAM:SSF46626	SUPFAM:SSF81496	UniParc:UPI0004EEBC5B	SEG:seg	:	:

Description

BnaC09g01370D

Coordinates

chrLK031916:+:1134971..1137601

Molecular Weight (calculated)

42129.5 Da

IEP (calculated)

8.280

GRAVY (calculated)

-0.130

Length

379 amino acids

Sequence
(BLAST)

001: MESVVGEKSK PSLLYLYYCV VEKLGSITAV SSWNTHFLSF LYFLLRSSIV SRRRSRRSIP RELIWYEALI KMVGGGIIQQ ILRRKKLHSP SLATPVRSWF
101: SSKTAHVDTG SSGVRAFALL GAGVTGLLSF STVASADEAE HGLACPDYPW PHDGILSSYD HASIRRGHQV YQQVCASCHS MSLISYRDLV GVAYTEEEAK
201: AMAAEIEVVD GPNDEGEMFT RPGKLSDRLP QPYSNESAAR FANGGAYPPD LSLITKARHN GQNYVFALLT GYRDPPAGIS IREGLHYNPY FPGGAIAMPK
301: MLNDEAVEYE DGVPATEAQM GKDVVSFLSW AAEPEMEERK LMGFKWIFLL SLALLQAAYY RRLKWSVLKS RKLVLDVVN

Best Arabidopsis Sequence Match ( AT5G40810.2 )
(BLAST)

001: MGAGITGLLS FSTVASADEA EHGLECPNYP WPHEGILSSY DHASIRRGHQ VYQQVCASCH SMSLISYRDL VGVAYTEEEA KAMAAEIEVV DGPNDEGEMF
101: TRPGKLSDRL PEPYSNESAA RFANGGAYPP DLSLVTKARH NGQNYVFALL TGYRDPPAGI SIREGLHYNP YFPGGAIAMP KMLNDEAVEY EDGTPATEAQ
201: MGKDVVSFLS WAAEPEMEER KLMGFKWIFL LSLALLQAAY YRRLKWSVLK SRKLVLDVVN

Arabidopsis Description

CYC12Cytochrome c1 2, heme protein, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q9FKS5]
SUBAcon: [peroxisome,plastid,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.