Factsheet for TraesCS7A01G278100.1

Subcellular Localization

min:

: max

Winner_takes_all: golgi, unclear

Predictor Summary:

plastid 2
mitochondrion 7

Predictors

GFP

MS/MS

Papers

golgi: 25769308
unclear: 25769308

msms PMID: 25769308 doi

AL Chateigner-Boutin, M Suliman, B Bouchet, C Alvarado, V Lollier, H Rogniaux, F Guillon, C Larré

INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France colette.larre@nantes.inra.fr., INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France.

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS1B01G451000.1
TraesCS2A01G239800.1
TraesCS6D01G200900.1
TraesCS6D01G375100.1
TraesCS7D01G238600.1
TraesCS7D01G533300.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G40810.1	TraesCS1B01G451000.1	ATMG00960.1	18644794
AT5G40810.1	TraesCS2A01G239800.1	ATMG00960.1	18644794
AT5G40810.1	TraesCS6D01G200900.1	ATMG00960.1	18644794
AT5G40810.1	TraesCS6D01G375100.1	ATMG00960.1	18644794
AT5G40810.1	TraesCS7D01G238600.1	ATMG00960.1	18644794
AT5G40810.1	TraesCS7D01G533300.1	ATMG00960.1	18644794

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS7D01G277900.1	Wheat	mitochondrion	100.0	100.0
TraesCS7B01G175500.1	Wheat	mitochondrion	99.34	99.34
HORVU7Hr1G058850.1	Barley	mitochondrion	98.68	98.68
Os05t0301700-01	Rice	mitochondrion	96.71	96.71
KXG25408	Sorghum	mitochondrion	94.08	94.08
Zm00001d049959_P001	Maize	mitochondrion	93.42	92.51
Bra025544.1-P	Field mustard	cytosol	24.34	90.24
Solyc02g093900.2.1	Tomato	nucleus, plastid	78.95	89.22
GSMUA_Achr1P09720_001	Banana	mitochondrion	84.21	83.93
VIT_14s0171g00330.t01	Wine grape	mitochondrion	85.53	83.87
AT5G40810.1	Thale cress	mitochondrion	83.55	82.74
GSMUA_Achr1P18150_001	Banana	mitochondrion	83.55	82.74
CDY34168	Canola	mitochondrion	83.55	82.74
Bra032991.1-P	Field mustard	mitochondrion	83.55	82.74
TraesCS3A01G458200.1	Wheat	cytosol, endoplasmic reticulum, mitochondrion	87.17	82.55
CDY28482	Canola	mitochondrion	83.22	82.41
Bra039089.1-P	Field mustard	mitochondrion	83.22	82.41
GSMUA_Achr7P05470_001	Banana	mitochondrion	83.55	82.2
AT3G27240.1	Thale cress	mitochondrion	82.89	82.08
CDY13693	Canola	mitochondrion	82.89	82.08
KRG94438	Soybean	mitochondrion	82.24	81.43
KRG94326	Soybean	mitochondrion	82.24	81.43
KRH57638	Soybean	mitochondrion	82.24	81.17
KRH07017	Soybean	mitochondrion	81.58	80.78
PGSC0003DMT400052104	Potato	mitochondrion	82.24	80.65
PGSC0003DMT400073387	Potato	mitochondrion	81.58	77.5
Solyc06g067920.2.1	Tomato	endoplasmic reticulum, nucleus, unclear	81.58	77.5
VIT_09s0002g05950.t01	Wine grape	endoplasmic reticulum, golgi	79.93	76.9
Solyc12g042920.1.1	Tomato	nucleus	80.92	75.93
PGSC0003DMT400073726	Potato	mitochondrion	80.59	75.62
Zm00001d031967_P001	Maize	cytosol, endoplasmic reticulum, peroxisome	90.46	75.14
Bra025260.1-P	Field mustard	mitochondrion	73.36	73.36
CDY20058	Canola	plastid	83.22	69.51
CDX83670	Canola	mitochondrion	82.89	67.74
CDY00164	Canola	endoplasmic reticulum	82.89	66.49
CDY36384	Canola	plastid	38.49	57.35

Protein Annotations

Gene3D:1.10.760.10	Gene3D:1.20.5.100	MapMan:2.4.3.2	InterPro:Cyt_c-like_dom	InterPro:Cyt_c-like_dom_sf	InterPro:Cyt_c1
InterPro:Cyt_c1_TM_anchor_C	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488	GO:GO:0009055	GO:GO:0020037
InterPro:IPR009056	InterPro:IPR036909	PFAM:PF02167	PRINTS:PR00603	PFscan:PS51007	PANTHER:PTHR10266
PANTHER:PTHR10266:SF6	SUPFAM:SSF46626	SUPFAM:SSF81496	EnsemblPlantsGene:TraesCS7A01G278100	EnsemblPlants:TraesCS7A01G278100.1	SEG:seg

Description

No Description!

Coordinates

chr7A:-:292848339..292850642

Molecular Weight (calculated)

33202.6 Da

IEP (calculated)

6.241

GRAVY (calculated)

-0.214

Length

304 amino acids

Sequence
(BLAST)

001: MAAGRGINQL LRKTLQSQSS GSSLLSSFRG KHEESSAGLR ALALLGVGAS GLLSFGTIAS ADEAEHGLAA AEYPWPHAGI LSSYDHASIR RGHQVYQQVC
101: ASCHSMSLIS YRDLVGVAYT EEETKAMAAE IEVVDGPNDE GEMFTRPGKL SDRFPQPYPN EQAARFANGG AYPPDLSLIT KARHDGQNYV FALLTGYHDP
201: PAGVQIREGL HYNPYFPGGA IAMPKMLMDG AIEYEDGTPA TEAQMGKDVV SFLSWAAEPE MEERKLMGVK WIFLLSLALL QAAYYRRMRW SVLKSRKLVL
301: DVVN

Best Arabidopsis Sequence Match ( AT3G27240.1 )
(BLAST)

001: MVGGGVIQQI LRRKLHSQSL ATPVLSWFSS KKAHEDAGSS GVRALALLGA GVTGLLSFST VASADEAEHG LESPEYPWPH DGILSSYDHA SIRRGHQVYQ
101: QVCASCHSMS LISYRDLVGV AYTEEEAKAM AAEIEVVDGP NDEGEMFTRP GKLSDRFPQP YANESAARFA NGGAYPPDLS LITKARHNGP NYVFALLTGY
201: RDPPAGISIR EGLHYNPYFP GGAIAMPKML NDEAVEYEDG VPATEAQMGK DIVSFLAWAA EPEMEERKLM GFKWIFLLSL ALLQAAYYRR LKWSVLKSRK
301: LVLDVVN

Arabidopsis Description

CYC11Cytochrome c1 1, heme protein, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q9LK29]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.