Subcellular Localization
min:
: max
Winner_takes_all: endoplasmic reticulum, cytosol, peroxisome
Predictor Summary:
Predictor Summary:
- plastid 1
- cytosol 1
- mitochondrion 1
- endoplasmic reticulum 1
- peroxisome 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| GRMZM5G867512_P01 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT5G40810.1 | GRMZM5G867512_P01 | ATMG00960.1 | 18644794 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra025544.1-P | Field mustard | cytosol | 20.77 | 92.68 |
| KXG25408 | Sorghum | mitochondrion | 76.78 | 92.43 |
| Zm00001d049959_P001 | Maize | mitochondrion | 76.5 | 91.21 |
| Os05t0301700-01 | Rice | mitochondrion | 75.68 | 91.12 |
| HORVU7Hr1G058850.1 | Barley | mitochondrion | 75.14 | 90.46 |
| TraesCS7A01G278100.1 | Wheat | golgi, unclear | 75.14 | 90.46 |
| TraesCS7B01G175500.1 | Wheat | mitochondrion | 75.14 | 90.46 |
| TraesCS7D01G277900.1 | Wheat | mitochondrion | 75.14 | 90.46 |
| Solyc02g093900.2.1 | Tomato | nucleus, plastid | 66.12 | 89.96 |
| Bra039089.1-P | Field mustard | mitochondrion | 68.85 | 82.08 |
| KRG94438 | Soybean | mitochondrion | 68.31 | 81.43 |
| CDY28482 | Canola | mitochondrion | 68.03 | 81.11 |
| CDY34168 | Canola | mitochondrion | 68.03 | 81.11 |
| Bra032991.1-P | Field mustard | mitochondrion | 68.03 | 81.11 |
| VIT_14s0171g00330.t01 | Wine grape | mitochondrion | 68.58 | 80.97 |
| KRH07017 | Soybean | mitochondrion | 67.76 | 80.78 |
| AT5G40810.1 | Thale cress | mitochondrion | 67.76 | 80.78 |
| CDY13693 | Canola | mitochondrion | 67.76 | 80.78 |
| PGSC0003DMT400052104 | Potato | mitochondrion | 68.03 | 80.32 |
| KRH57638 | Soybean | mitochondrion | 67.49 | 80.19 |
| KRG94326 | Soybean | mitochondrion | 67.21 | 80.13 |
| AT3G27240.1 | Thale cress | mitochondrion | 67.21 | 80.13 |
| GSMUA_Achr1P09720_001 | Banana | mitochondrion | 66.39 | 79.67 |
| GSMUA_Achr7P05470_001 | Banana | mitochondrion | 66.94 | 79.29 |
| GSMUA_Achr1P18150_001 | Banana | mitochondrion | 66.12 | 78.83 |
| PGSC0003DMT400073387 | Potato | mitochondrion | 68.58 | 78.44 |
| Solyc06g067920.2.1 | Tomato | endoplasmic reticulum, nucleus, unclear | 68.31 | 78.12 |
| VIT_09s0002g05950.t01 | Wine grape | endoplasmic reticulum, golgi | 67.21 | 77.85 |
| Solyc12g042920.1.1 | Tomato | nucleus | 67.21 | 75.93 |
| PGSC0003DMT400073726 | Potato | mitochondrion | 66.94 | 75.62 |
| Bra025260.1-P | Field mustard | mitochondrion | 59.84 | 72.04 |
| CDY20058 | Canola | plastid | 68.85 | 69.23 |
| CDX83670 | Canola | mitochondrion | 68.31 | 67.2 |
| CDY00164 | Canola | endoplasmic reticulum | 67.76 | 65.44 |
| CDY36384 | Canola | plastid | 31.97 | 57.35 |
Protein Annotations
| Gene3D:1.10.760.10 | Gene3D:1.20.5.100 | EntrezGene:100194151 | MapMan:2.4.3.2 | UniProt:A0A1D6KMR9 | InterPro:Cyt_c-like_dom |
| InterPro:Cyt_c-like_dom_sf | InterPro:Cyt_c1 | InterPro:Cyt_c1_TM_anchor_C | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0005488 |
| GO:GO:0006091 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009055 | GO:GO:0009987 | GO:GO:0020037 |
| GO:GO:0022900 | GO:GO:0046872 | InterPro:IPR009056 | InterPro:IPR036909 | ProteinID:ONM04133.1 | PFAM:PF02167 |
| PRINTS:PR00603 | PFscan:PS51007 | PANTHER:PTHR10266 | PANTHER:PTHR10266:SF6 | SUPFAM:SSF46626 | SUPFAM:SSF81496 |
| UniParc:UPI0008424282 | EnsemblPlantsGene:Zm00001d031967 | EnsemblPlants:Zm00001d031967_P001 | EnsemblPlants:Zm00001d031967_T001 | SEG:seg | : |
Description
Cytochrome c1 1 heme protein mitochondrial
Coordinates
chr1:-:208218165..208223089
Molecular Weight (calculated)
40224.8 Da
IEP (calculated)
5.554
GRAVY (calculated)
-0.175
Length
366 amino acids
Sequence
(BLAST)
(BLAST)
001: MPSHRPTHCL PEANLPQVHF VLQLSQESSI LGMSRGMSRA FDDYYIEDCG VILAPEVTQR KTDNNNQFEF VILATVGVAF VPGSSPLFSF RGKHEESSAG
101: LRALALLGVG ASGLLSFATI ASADEAEHGL AAPDYPWPHA GIMSSYDHAS IRRGHQVYTQ VCASCHSMSL ISYRDLVGVA YTEEETKAMA AEIEVVDGPN
201: DEGEMFTRPG KLSDRFPQPY ANEQAARFAN GGAYPPDLSL ITKARHNGQN YVFALLTGYH DPPAGVQIRE GLHYNPYFPG GAIAMPKMLN DGAVEYEDGT
301: PATEAQMGKD VVSFLSWAAE PEMEERKLMG VKWIFLLSLA LLQAAYYRRM RWSVLKSRKL VLDVVN
101: LRALALLGVG ASGLLSFATI ASADEAEHGL AAPDYPWPHA GIMSSYDHAS IRRGHQVYTQ VCASCHSMSL ISYRDLVGVA YTEEETKAMA AEIEVVDGPN
201: DEGEMFTRPG KLSDRFPQPY ANEQAARFAN GGAYPPDLSL ITKARHNGQN YVFALLTGYH DPPAGVQIRE GLHYNPYFPG GAIAMPKMLN DGAVEYEDGT
301: PATEAQMGKD VVSFLSWAAE PEMEERKLMG VKWIFLLSLA LLQAAYYRRM RWSVLKSRKL VLDVVN
001: MVGGGVIQQI LRRKLHSQSL ATPVLSWFSS KKAHEDAGSS GVRALALLGA GVTGLLSFST VASADEAEHG LESPEYPWPH DGILSSYDHA SIRRGHQVYQ
101: QVCASCHSMS LISYRDLVGV AYTEEEAKAM AAEIEVVDGP NDEGEMFTRP GKLSDRFPQP YANESAARFA NGGAYPPDLS LITKARHNGP NYVFALLTGY
201: RDPPAGISIR EGLHYNPYFP GGAIAMPKML NDEAVEYEDG VPATEAQMGK DIVSFLAWAA EPEMEERKLM GFKWIFLLSL ALLQAAYYRR LKWSVLKSRK
301: LVLDVVN
101: QVCASCHSMS LISYRDLVGV AYTEEEAKAM AAEIEVVDGP NDEGEMFTRP GKLSDRFPQP YANESAARFA NGGAYPPDLS LITKARHNGP NYVFALLTGY
201: RDPPAGISIR EGLHYNPYFP GGAIAMPKML NDEAVEYEDG VPATEAQMGK DIVSFLAWAA EPEMEERKLM GFKWIFLLSL ALLQAAYYRR LKWSVLKSRK
301: LVLDVVN
Arabidopsis Description
CYC11Cytochrome c1 1, heme protein, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q9LK29]
SUBAcon: [mitochondrion]
SUBAcon: [mitochondrion]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.