Factsheet for GRMZM5G867512_P01

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

nucleus 1
golgi 2
extracellular 1
endoplasmic reticulum 2
vacuole 2
plasma membrane 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	mitochondrion
Any Predictor:	nucleus, secretory
BaCelLo:	nucleus
MultiLoc:	golgi
PProwler:	secretory
WoLF PSORT:	endoplasmic reticulum
YLoc:	vacuole

mitochondrion: 27297264

msms PMID: 27297264 doi

D Dahal, KJ Newton, BP Mooney

Division of Biological Sciences, ‡Department of Biochemistry, and §The Charles W Gehrke Proteomics Center, University of Missouri , Columbia, Missouri 65211, United States.

PPI

Inferred distinct locusB in Crop

locusB	locations
Zm00001d010236_P001
Zm00001d031967_P001
Zm00001d038218_P001
Zm00001d042600_P001
Zm00001d049959_P001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
ATMG00960.1	Zm00001d010236_P001	AT1G22840.1	18644794
ATMG00960.1	Zm00001d038218_P001	AT1G22840.1	18644794
ATMG00960.1	Zm00001d042600_P001	AT1G22840.1	18644794
ATMG00960.1	Zm00001d031967_P001	AT5G40810.1	18644794
ATMG00960.1	Zm00001d049959_P001	AT5G40810.1	18644794

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS1B01G451000.1	Wheat	mitochondrion	44.52	93.56
BAV58158	Barley	plasma membrane	88.87	93.55
TraesCS7D01G533300.1	Wheat	endoplasmic reticulum, mitochondrion, plasma membrane	44.19	92.88
BAC19893	Rice	endoplasmic reticulum	88.87	92.76
HORVU2Hr1G086550.1	Barley	plasma membrane	88.06	92.7
TraesCS2A01G239800.1	Wheat	mitochondrion	43.71	91.86
TraesCS6D01G375100.1	Wheat	mitochondrion	45.65	91.59
TraesCS6D01G200900.1	Wheat	plastid	41.94	90.91
TraesCS7D01G238600.1	Wheat	plasma membrane	83.71	90.42
ATMG00960.1	Thale cress	cytosol, peroxisome, plasma membrane	28.87	88.18
GSMUA_AchrUn_...	Banana	plasma membrane	47.26	80.27
AT2G07768.1	Thale cress	mitochondrion	18.23	73.38
CDY69820	Canola	mitochondrion	12.74	64.75
CDY17575	Canola	mitochondrion	11.29	55.56
CDY17565	Canola	mitochondrion	12.74	50.0
CDY45536	Canola	mitochondrion	14.84	44.23

Protein Annotations

MapMan:2.4.4.2.3.2	EntrezGene:4055896	ProteinID:AAR91045.1	InterPro:Cyt_c_assembly	InterPro:Cyt_c_biogenesis	InterPro:Cyt_c_biogenesis_plant
GO:GO:0003674	GO:GO:0005215	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0005739	GO:GO:0006810	GO:GO:0008150	GO:GO:0009987	GO:GO:0015232
GO:GO:0015886	GO:GO:0016020	GO:GO:0016021	GO:GO:0016043	GO:GO:0017004	GO:GO:0020037
EnsemblPlantsGene:GRMZM5G867512	EnsemblPlants:GRMZM5G867512_P01	EnsemblPlants:GRMZM5G867512_T01	PFAM:PF01578	PIRSF:PIRSF005240	PRINTS:PR01410
PRINTS:PR01412	PANTHER:PTHR30009	PANTHER:PTHR30009:SF23	UniProt:Q6R9E9	TMHMM:TMhelix	UniParc:UPI0000233F2B
SEG:seg	:	:	:	:	:

Description

Cytochrome c biogenesis FN [Source:UniProtKB/TrEMBL;Acc:Q6R9E9]

Coordinates

chrMt:-:273331..275849

Molecular Weight (calculated)

69749.4 Da

IEP (calculated)

10.708

GRAVY (calculated)

-0.055

Length

620 amino acids

Sequence
(BLAST)

001: MGITKQKLGN EHEMSINEFS HYLLFPGLFV AFTYNKKQPP AFGAAPAFWC ILLSFLGLSF RHIPNNLSNY NVLTANAPFF YQISGTWSNH EGSIFSWCWI
101: PSFYGFLFCY RYRGRPQSHN VSKRRGYRET FIFSFVSNFV KNSILSLQQK SGAAPQLYTP FVRRTLVDSE LRSQSKRPFN GPALFNAPLD PVLKMSFALL
201: GAGRSRGSRE GKRTNLLLHL ARDEKERASS IDEQQIDGAL GIALFFSPFL SASSDPFVRN FFVRTEPLAE SNPVPQDPIS AIHPPCIYAG DVASAMGFGL
301: CRSKMMNGIV ALHSPPMRKD AAEKNGTLLR SAGCVGSHIR SSLFTRSFKH FVGGAPALLL RSNRSLLRRR FFAFSSLWTG ALMDTGREQA KRVVVRNGKK
401: DTTTSPLCWT AGANTVVSDQ DQEPIRIWIL TCWLFLTVGI SPGSWWAHHE LGRGGWWFRD PVENASFMPR VLATALIHSV ILPLLHYWTS LLNILTLPCC
501: VSGTFSIRSG LLAPVHSSAT DDTRGRFLWR FFLLITGISM TLFYQMKQVR RTYKKEMVVA RSTLVHLRHP ARAQPRPVML WKNLASCWAG YSEPATGWLP
601: DFVPSVALRK SLWRGAAGYF

Best Arabidopsis Sequence Match ( ATMG00830.1 )
(BLAST)

001: MSISIYEFFH YSLFPGLFVA FTYNKKQPPA FGAAPAFWCI LLSFLGLSFC HIPNNLSNYN VLTANAPFFY QISGTWSNHE GSILLWCRIP NFYGFFLCYR
101: GRPQSHNVLK QGGHRESLFF FFVSNFVKNS ILSLPRYEQE SGLKNQLYTP FVLRTLVDSE LRSRRNRTFD GPALFYAPLY PERKIKNPLD AWRSRGSREG
201: KRTHPLLHLA RDDKERASSI DEQRIDGALG IALFFSPFLS ASSDPFVRNF FVCTEPLAES NPVPQDPISA IHPPCIYAGD VASAEGFGLC RSKMMNGIVA
301: LHSPPMRKDA AEKNGTLLRS AGCVGSRITS ELFTLKFKHV GAKCYPALLL RSNRSPLMLL RRRFFAFSSF WAGARSHSTK RY

Arabidopsis Description

CCB382CcmFN1 [Source:UniProtKB/TrEMBL;Acc:G1C2S2]
SUBAcon: [endoplasmic reticulum,vacuole]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.