CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

plasma membrane 2
vacuole 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plasma membrane
Any Predictor:	plasma membrane
MultiLoc:	plasma membrane
WoLF PSORT:	plasma membrane
YLoc:	vacuole

PPI

Inferred distinct locusB in Crop

locusB	locations
HORVU0Hr1G010690.1
HORVU1Hr1G025070.1
HORVU1Hr1G063940.1
HORVU3Hr1G090840.1
HORVU3Hr1G098650.1
HORVU3Hr1G115140.1
HORVU3Hr1G115160.1
HORVU6Hr1G037030.1
HORVU6Hr1G037070.1
HORVU7Hr1G058850.1
HORVU7Hr1G067010.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
ATMG00960.1	HORVU1Hr1G063940.1	AT1G22840.1	18644794
ATMG00960.1	HORVU3Hr1G090840.1	AT1G22840.1	18644794
ATMG00960.1	HORVU3Hr1G098650.1	AT5G40810.1	18644794
ATMG00960.1	HORVU7Hr1G058850.1	AT5G40810.1	18644794
ATMG00960.1	HORVU0Hr1G010690.1	ATMG00180.1	18644794
ATMG00960.1	HORVU1Hr1G025070.1	ATMG00180.1	18644794
ATMG00960.1	HORVU6Hr1G037070.1	ATMG00180.1	18644794
ATMG00960.1	HORVU7Hr1G067010.1	ATMG00180.1	18644794
ATMG00960.1	HORVU3Hr1G115140.1	ATMG00830.1	18644794
ATMG00960.1	HORVU3Hr1G115160.1	ATMG00830.1	18644794
ATMG00960.1	HORVU6Hr1G037030.1	ATMG00830.1	18644794

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
HORVU3Hr1G115140.1	Barley	plasma membrane, plastid, vacuole	14.26	100.0
HORVU2Hr1G086550.1	Barley	plasma membrane	98.81	98.81
HORVU3Hr1G055030.1	Barley	mitochondrion, peroxisome, plastid, vacuole	13.92	94.25
BAC19893	Rice	endoplasmic reticulum	94.91	94.11
HORVU2Hr1G070240.1	Barley	golgi, mitochondrion, vacuole	6.79	90.91
ATMG00960.1	Thale cress	cytosol, peroxisome, plasma membrane	30.73	89.16
GRMZM5G867512_P01	Maize	mitochondrion	93.55	88.87
HORVU4Hr1G044830.1	Barley	mitochondrion, plasma membrane, vacuole	13.07	88.51
HORVU2Hr1G070250.1	Barley	extracellular, vacuole	12.56	88.1
HORVU3Hr1G115160.1	Barley	endoplasmic reticulum	11.04	86.67
HORVU5Hr1G058280.1	Barley	extracellular, golgi, mitochondrion	12.56	85.06
HORVU6Hr1G024690.1	Barley	endoplasmic reticulum, extracellular, vacuole	10.7	84.0
HORVU5Hr1G112980.1	Barley	endoplasmic reticulum, plasma membrane, vacuole	10.53	83.78
GSMUA_AchrUn_...	Banana	plasma membrane	51.27	82.74
AT2G07768.1	Thale cress	mitochondrion	19.69	75.32
CDY69820	Canola	mitochondrion	13.58	65.57
HORVU7Hr1G086940.1	Barley	endoplasmic reticulum, plasma membrane, vacuole	11.38	58.26
CDY17575	Canola	mitochondrion	12.39	57.94
HORVU6Hr1G037030.1	Barley	cytosol	5.6	55.93
CDY17565	Canola	mitochondrion	13.75	51.27
HORVU4Hr1G044810.1	Barley	vacuole	9.68	50.89
CDY45536	Canola	mitochondrion	15.96	45.19
HORVU4Hr1G044820.1	Barley	plastid	5.6	39.76

Protein Annotations

MapMan:2.4.4.2.3.2	GO:A0A1C9ZRK0	UniProt:A0A1C9ZRK0	ENA:AP017301.1:CDS:492667..494436	EnsemblPlants:BAV58158	ProteinID:BAV58158
ProteinID:BAV58158.1	InterPro:Cyt_c_assembly	InterPro:Cyt_c_biogenesis	InterPro:Cyt_c_biogenesis_plant	EnsemblPlantsGene:EPlHVUG00000039861	GO:GO:0003674
GO:GO:0005215	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0005739	GO:GO:0006810	GO:GO:0008150	GO:GO:0009987	GO:GO:0015232	GO:GO:0015886
GO:GO:0016020	GO:GO:0016021	GO:GO:0016043	GO:GO:0017004	GO:GO:0020037	PFAM:PF01578
PIRSF:PIRSF005240	PRINTS:PR01410	PRINTS:PR01412	PANTHER:PTHR30009	PANTHER:PTHR30009:SF23	TMHMM:TMhelix
UniParc:UPI000864C1C4	SEG:seg	:	:	:	:

Description

ccmFNcytochrome c biogenesis protein ccmF

Coordinates

chrMt:+:492667..494436

Molecular Weight (calculated)

66176.4 Da

IEP (calculated)

10.834

GRAVY (calculated)

-0.046

Length

589 amino acids

Sequence
(BLAST)

001: MMGITKQKFG NEHEMSINEF SHYSLFPGLF VAFTYNKKQP PAFGAALAFW CILLPFLGLS FRHIPNNLSN YNVLTANAPF FYQISGTWSN HEGSILSWCW
101: IPSFYGFLFC YRGRPQSHNV SKRRGYRETL IFSFVSNFVK NSILSLQQKS GAAPQLYTPF VRRTLVDSEL RSQSKRPFNG PALFNAPLDP VLKMSFALLG
201: AGRSRGSREG KRTNLLLHLA RDEKERASSI DEQQIDGALG IALFFSPFLS ASSDPFVRNF FVRTEPLAES NPVPQDPISA IHPPCIYAGD VASAMGFGLC
301: RSKMMNGIVA LHSPPMRKDA AEKNGTLLRS AGCVGSHIRS SLFTRSFKHF VGGAPALLLR SNRSLLMLLR RRFFAFSSLW TGALMDTGRE QAKRVVRNGK
401: KDTTTSPLCW TAGANTVVSD QDQEPIRIWI LTCRLFLTVG ISPGSWWAHH ELGRGGWWFR DPVENASFMP RVLATARIHS VILPLLHSWT SLLNILTLPC
501: CVLGTFSIRS GLLAPVHSSA TDDTRGRFLW RFFLLITGIS MTLFYQMKQE ASVRRTYKKE MVVARSTLVH LRHSARAQPR PVMLCYGRI

Best Arabidopsis Sequence Match ( ATMG00830.1 )
(BLAST)

001: MSISIYEFFH YSLFPGLFVA FTYNKKQPPA FGAAPAFWCI LLSFLGLSFC HIPNNLSNYN VLTANAPFFY QISGTWSNHE GSILLWCRIP NFYGFFLCYR
101: GRPQSHNVLK QGGHRESLFF FFVSNFVKNS ILSLPRYEQE SGLKNQLYTP FVLRTLVDSE LRSRRNRTFD GPALFYAPLY PERKIKNPLD AWRSRGSREG
201: KRTHPLLHLA RDDKERASSI DEQRIDGALG IALFFSPFLS ASSDPFVRNF FVCTEPLAES NPVPQDPISA IHPPCIYAGD VASAEGFGLC RSKMMNGIVA
301: LHSPPMRKDA AEKNGTLLRS AGCVGSRITS ELFTLKFKHV GAKCYPALLL RSNRSPLMLL RRRFFAFSSF WAGARSHSTK RY

Arabidopsis Description

CCB382CcmFN1 [Source:UniProtKB/TrEMBL;Acc:G1C2S2]
SUBAcon: [endoplasmic reticulum,vacuole]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.