Factsheet for HORVU3Hr1G115160.1

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum

Predictor Summary:

plastid 1
endoplasmic reticulum 4
extracellular 2
vacuole 3
plasma membrane 2
golgi 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	endoplasmic reticulum
Any Predictor:	plastid, secretory
iPSORT:	plastid
MultiLoc:	endoplasmic reticulum
Predotar:	secretory
TargetP:	secretory
WoLF PSORT:	endoplasmic reticulum
YLoc:	vacuole

PPI

Inferred distinct locusB in Crop

locusB	locations
BAV58158
HORVU0Hr1G010690.1
HORVU1Hr1G025070.1
HORVU2Hr1G070240.1
HORVU2Hr1G070250.1
HORVU2Hr1G086550.1
HORVU3Hr1G055030.1
HORVU5Hr1G058280.1
HORVU6Hr1G037070.1
HORVU7Hr1G067010.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
ATMG00830.1	HORVU0Hr1G010690.1	ATMG00180.1	18644794
ATMG00830.1	HORVU1Hr1G025070.1	ATMG00180.1	18644794
ATMG00830.1	HORVU6Hr1G037070.1	ATMG00180.1	18644794
ATMG00830.1	HORVU7Hr1G067010.1	ATMG00180.1	18644794
ATMG00830.1	BAV58158	ATMG00960.1	18644794
ATMG00830.1	HORVU2Hr1G070240.1	ATMG00960.1	18644794
ATMG00830.1	HORVU2Hr1G070250.1	ATMG00960.1	18644794
ATMG00830.1	HORVU2Hr1G086550.1	ATMG00960.1	18644794
ATMG00830.1	HORVU3Hr1G055030.1	ATMG00960.1	18644794
ATMG00830.1	HORVU5Hr1G058280.1	ATMG00960.1	18644794

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
HORVU6Hr1G024690.1	Barley	endoplasmic reticulum, extracellular, vacuole	84.0	84.0
HORVU5Hr1G112980.1	Barley	endoplasmic reticulum, plasma membrane, vacuole	82.67	83.78
HORVU7Hr1G086940.1	Barley	endoplasmic reticulum, plasma membrane, vacuole	86.67	56.52
HORVU4Hr1G044810.1	Barley	vacuole	72.0	48.21
GSMUA_Achr5P20920_001	Banana	cytosol, plasma membrane, vacuole	68.0	31.48
CDY45509	Canola	endoplasmic reticulum, vacuole	82.67	16.27
TraesCS4B01G146000.1	Wheat	cytosol, plasma membrane, vacuole	85.33	16.0
ATMG00830.1	Thale cress	endoplasmic reticulum, vacuole	81.33	15.97
VIT_00s0332g00130.t01	Wine grape	endoplasmic reticulum, plasma membrane, vacuole	76.0	13.07
BAV58158	Barley	plasma membrane	86.67	11.04
HORVU2Hr1G086550.1	Barley	plasma membrane	86.67	11.04
HORVU3Hr1G115140.1	Barley	plasma membrane, plastid, vacuole	0.0	0.0
HORVU4Hr1G044820.1	Barley	plastid	0.0	0.0
HORVU4Hr1G044830.1	Barley	mitochondrion, plasma membrane, vacuole	0.0	0.0
HORVU5Hr1G058280.1	Barley	extracellular, golgi, mitochondrion	0.0	0.0
HORVU3Hr1G055030.1	Barley	mitochondrion, peroxisome, plastid, vacuole	0.0	0.0
HORVU6Hr1G037030.1	Barley	cytosol	0.0	0.0
HORVU2Hr1G070250.1	Barley	extracellular, vacuole	0.0	0.0
PGSC0003DMT400043522	Potato	peroxisome	0.0	0.0
Solyc06g065880.1.1	Tomato	cytosol	0.0	0.0
HORVU2Hr1G070240.1	Barley	golgi, mitochondrion, vacuole	0.0	0.0
VIT_00s0246g00060.t01	Wine grape	mitochondrion	0.0	0.0
CDY17583	Canola	mitochondrion	0.0	0.0

Protein Annotations

EnsemblPlants:HORVU3Hr1G115160.1	EnsemblPlantsGene:HORVU3Hr1G115160	GO:GO:0003674	GO:GO:0005215	GO:GO:0005575	GO:GO:0006810
GO:GO:0008150	GO:GO:0009987	GO:GO:0015232	GO:GO:0015886	GO:GO:0016020	GO:GO:0016021
GO:GO:0016043	GO:GO:0017004	InterPro:Cyt_c_biogenesis_plant	PANTHER:PTHR30009	PANTHER:PTHR30009:SF23	PRINTS:PR01412
TMHMM:TMhelix	UniParc:UPI000B467293	UniProt:A0A287MSM1	MapMan:2.4.4.2.3.2	:	:

Description

No Description!

Coordinates

chrchr3H:-:692717011..692717371

Molecular Weight (calculated)

8517.4 Da

IEP (calculated)

9.190

GRAVY (calculated)

0.417

Length

75 amino acids

Sequence
(BLAST)

1: MSINEFSHYS LFPGLFVAFT YNKKQPPAFG AALAFWCILL PFLGLSFRHI PNNLSNYNVL TANAPFFLSN LRDMV

Best Arabidopsis Sequence Match ( ATMG00830.1 )
(BLAST)

001: MSISIYEFFH YSLFPGLFVA FTYNKKQPPA FGAAPAFWCI LLSFLGLSFC HIPNNLSNYN VLTANAPFFY QISGTWSNHE GSILLWCRIP NFYGFFLCYR
101: GRPQSHNVLK QGGHRESLFF FFVSNFVKNS ILSLPRYEQE SGLKNQLYTP FVLRTLVDSE LRSRRNRTFD GPALFYAPLY PERKIKNPLD AWRSRGSREG
201: KRTHPLLHLA RDDKERASSI DEQRIDGALG IALFFSPFLS ASSDPFVRNF FVCTEPLAES NPVPQDPISA IHPPCIYAGD VASAEGFGLC RSKMMNGIVA
301: LHSPPMRKDA AEKNGTLLRS AGCVGSRITS ELFTLKFKHV GAKCYPALLL RSNRSPLMLL RRRFFAFSSF WAGARSHSTK RY

Arabidopsis Description

CCB382CcmFN1 [Source:UniProtKB/TrEMBL;Acc:G1C2S2]
SUBAcon: [endoplasmic reticulum,vacuole]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.