Subcellular Localization
min:
: max
Winner_takes_all: extracellular, vacuole
Predictor Summary:
Predictor Summary:
- extracellular 2
- endoplasmic reticulum 1
- vacuole 2
- plasma membrane 1
- golgi 1
Predictors | GFP | MS/MS | Papers | ||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
locus | Identity | Homology Identity |
---|
Ortholog
locus | Homology Species | Location | Identity | Homology Identity |
---|---|---|---|---|
HORVU3Hr1G115140.1 | Barley | plasma membrane, plastid, vacuole | 88.1 | 88.1 |
HORVU4Hr1G044820.1 | Barley | plastid | 34.52 | 34.94 |
GSMUA_AchrUn_... | Banana | plasma membrane | 54.76 | 12.6 |
BAV58158 | Barley | plasma membrane | 88.1 | 12.56 |
HORVU2Hr1G086550.1 | Barley | plasma membrane | 88.1 | 12.56 |
TraesCS7D01G238600.1 | Wheat | plasma membrane | 85.71 | 12.54 |
TraesCS2A01G239800.1 | Wheat | mitochondrion | 29.76 | 8.47 |
TraesCS7D01G533300.1 | Wheat | endoplasmic reticulum, mitochondrion, plasma membrane | 28.57 | 8.14 |
TraesCS1B01G451000.1 | Wheat | mitochondrion | 28.57 | 8.14 |
TraesCS6D01G375100.1 | Wheat | mitochondrion | 29.76 | 8.09 |
CDY45536 | Canola | mitochondrion | 15.48 | 6.25 |
CDY17565 | Canola | mitochondrion | 7.14 | 3.8 |
CDY17575 | Canola | mitochondrion | 4.76 | 3.17 |
CDY69820 | Canola | mitochondrion | 2.38 | 1.64 |
AT2G07768.1 | Thale cress | mitochondrion | 2.38 | 1.3 |
HORVU4Hr1G044810.1 | Barley | vacuole | 0.0 | 0.0 |
HORVU7Hr1G086940.1 | Barley | endoplasmic reticulum, plasma membrane, vacuole | 0.0 | 0.0 |
HORVU6Hr1G037030.1 | Barley | cytosol | 0.0 | 0.0 |
HORVU6Hr1G024690.1 | Barley | endoplasmic reticulum, extracellular, vacuole | 0.0 | 0.0 |
HORVU5Hr1G112980.1 | Barley | endoplasmic reticulum, plasma membrane, vacuole | 0.0 | 0.0 |
HORVU5Hr1G058280.1 | Barley | extracellular, golgi, mitochondrion | 0.0 | 0.0 |
HORVU4Hr1G044830.1 | Barley | mitochondrion, plasma membrane, vacuole | 0.0 | 0.0 |
HORVU3Hr1G115160.1 | Barley | endoplasmic reticulum | 0.0 | 0.0 |
HORVU3Hr1G055030.1 | Barley | mitochondrion, peroxisome, plastid, vacuole | 0.0 | 0.0 |
HORVU2Hr1G070240.1 | Barley | golgi, mitochondrion, vacuole | 0.0 | 0.0 |
ATMG00960.1 | Thale cress | cytosol, peroxisome, plasma membrane | 0.0 | 0.0 |
Protein Annotations
MapMan:2.4.4.2.3.2 | UniProt:A0A287ICE1 | InterPro:Cyt_c_assembly | InterPro:Cyt_c_biogenesis | InterPro:Cyt_c_biogenesis_plant | GO:GO:0003674 |
GO:GO:0005215 | GO:GO:0005488 | GO:GO:0005575 | GO:GO:0006810 | GO:GO:0008150 | GO:GO:0009987 |
GO:GO:0015232 | GO:GO:0015886 | GO:GO:0016020 | GO:GO:0016043 | GO:GO:0017004 | GO:GO:0020037 |
EnsemblPlantsGene:HORVU2Hr1G070250 | EnsemblPlants:HORVU2Hr1G070250.1 | PFAM:PF01578 | PRINTS:PR01410 | PRINTS:PR01412 | PANTHER:PTHR30009 |
PANTHER:PTHR30009:SF23 | UniParc:UPI000B4691C7 | SEG:seg | : | : | : |
Description
No Description!
Coordinates
chrchr2H:-:495727677..495727928
Molecular Weight (calculated)
9202.2 Da
IEP (calculated)
8.249
GRAVY (calculated)
0.231
Length
84 amino acids
Sequence
(BLAST)
(BLAST)
1: GIALFFSPFL SASSDVFVRN FFVHTEPLAE SNPVPQDPIL AIHPPCIYAE DVTNAMGFGL CRSKMLNGIV ALHFPPMRKN AAKK
001: MSISIYEFFH YSLFPGLFVA FTYNKKQPPA FGAAPAFWCI LLSFLGLSFC HIPNNLSNYN VLTANAPFFY QISGTWSNHE GSILLWCRIP NFYGFFLCYR
101: GRPQSHNVLK QGGHRESLFF FFVSNFVKNS ILSLPRYEQE SGLKNQLYTP FVLRTLVDSE LRSRRNRTFD GPALFYAPLY PERKIKNPLD AWRSRGSREG
201: KRTHPLLHLA RDDKERASSI DEQRIDGALG IALFFSPFLS ASSDPFVRNF FVCTEPLAES NPVPQDPISA IHPPCIYAGD VASAEGFGLC RSKMMNGIVA
301: LHSPPMRKDA AEKNGTLLRS AGCVGSRITS ELFTLKFKHV GAKCYPALLL RSNRSPLMLL RRRFFAFSSF WAGARSHSTK RY
101: GRPQSHNVLK QGGHRESLFF FFVSNFVKNS ILSLPRYEQE SGLKNQLYTP FVLRTLVDSE LRSRRNRTFD GPALFYAPLY PERKIKNPLD AWRSRGSREG
201: KRTHPLLHLA RDDKERASSI DEQRIDGALG IALFFSPFLS ASSDPFVRNF FVCTEPLAES NPVPQDPISA IHPPCIYAGD VASAEGFGLC RSKMMNGIVA
301: LHSPPMRKDA AEKNGTLLRS AGCVGSRITS ELFTLKFKHV GAKCYPALLL RSNRSPLMLL RRRFFAFSSF WAGARSHSTK RY
Arabidopsis Description
CCB382CcmFN1 [Source:UniProtKB/TrEMBL;Acc:G1C2S2]
SUBAcon: [endoplasmic reticulum,vacuole]
SUBAcon: [endoplasmic reticulum,vacuole]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.