Factsheet for GSMUA_AchrUn_randomP09060_001

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

plastid 2
mitochondrion 2
plasma membrane 4
extracellular 2
endoplasmic reticulum 2
vacuole 3
golgi 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plasma membrane
Any Predictor:	mitochondrion, plastid, secretory
BaCelLo:	plastid
EpiLoc:	mitochondrion
iPSORT:	plastid
MultiLoc:	plasma membrane
Plant-mPloc:	mitochondrion
Predotar:	secretory
PProwler:	secretory
WoLF PSORT:	plasma membrane
YLoc:	vacuole

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr11P...
GSMUA_Achr5P01400_001
GSMUA_Achr5P17710_001
GSMUA_Achr5P20920_001
GSMUA_Achr6P18470_001
GSMUA_Achr7P23550_001
GSMUA_AchrUn_...
GSMUA_AchrUn_...
GSMUA_AchrUn_...
GSMUA_AchrUn_...

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
ATMG00960.1	GSMUA_Achr11P...	AT1G22840.1	18644794
ATMG00960.1	GSMUA_Achr5P01400_001	AT1G22840.1	18644794
ATMG00960.1	GSMUA_Achr6P18470_001	AT1G22840.1	18644794
ATMG00960.1	GSMUA_Achr7P23550_001	AT1G22840.1	18644794
ATMG00960.1	GSMUA_Achr5P17710_001	AT5G40810.1	18644794
ATMG00960.1	GSMUA_AchrUn_...	AT5G40810.1	18644794
ATMG00960.1	GSMUA_AchrUn_...	AT5G40810.1	18644794
ATMG00960.1	GSMUA_AchrUn_...	AT5G40810.1	18644794
ATMG00960.1	GSMUA_AchrUn_...	ATMG00180.1	18644794
ATMG00960.1	GSMUA_Achr5P20920_001	ATMG00830.1	18644794

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
HORVU2Hr1G070240.1	Barley	golgi, mitochondrion, vacuole	9.86	81.82
HORVU5Hr1G058280.1	Barley	extracellular, golgi, mitochondrion	17.81	74.71
HORVU3Hr1G055030.1	Barley	mitochondrion, peroxisome, plastid, vacuole	17.81	74.71
ATMG00960.1	Thale cress	cytosol, peroxisome, plasma membrane	40.27	72.41
AT2G07768.1	Thale cress	mitochondrion	27.4	64.94
CDY69820	Canola	mitochondrion	18.36	54.92
HORVU2Hr1G070250.1	Barley	extracellular, vacuole	12.6	54.76
CDY17575	Canola	mitochondrion	18.63	53.97
TraesCS1B01G451000.1	Wheat	mitochondrion	42.74	52.88
TraesCS7D01G533300.1	Wheat	endoplasmic reticulum, mitochondrion, plasma membrane	42.47	52.54
TraesCS6D01G200900.1	Wheat	plastid	40.82	52.1
BAV58158	Barley	plasma membrane	82.74	51.27
HORVU2Hr1G086550.1	Barley	plasma membrane	82.74	51.27
TraesCS2A01G239800.1	Wheat	mitochondrion	41.37	51.19
TraesCS6D01G375100.1	Wheat	mitochondrion	42.19	49.84
BAC19893	Rice	endoplasmic reticulum	80.55	49.49
GSMUA_Achr5P20920_001	Banana	cytosol, plasma membrane, vacuole	21.37	48.15
TraesCS7D01G238600.1	Wheat	plasma membrane	75.34	47.91
GRMZM5G867512_P01	Maize	mitochondrion	80.27	47.26
CDY17565	Canola	mitochondrion	12.05	27.85
CDY45536	Canola	mitochondrion	15.62	27.4

Protein Annotations

MapMan:2.4.4.2.3.2	InterPro:Cyt_c_assembly	InterPro:Cyt_c_biogenesis	InterPro:Cyt_c_biogenesis_plant	GO:GO:0003674	GO:GO:0005215
GO:GO:0005488	GO:GO:0005575	GO:GO:0006810	GO:GO:0008150	GO:GO:0009987	GO:GO:0015232
GO:GO:0015886	GO:GO:0016020	GO:GO:0016021	GO:GO:0016043	GO:GO:0017004	GO:GO:0020037
EnsemblPlantsGene:GSMUA_AchrUn_randomG09060_001	EnsemblPlants:GSMUA_AchrUn_randomP09060_001	EnsemblPlants:GSMUA_AchrUn_randomT09060_001	UniProt:M0U7L6	PFAM:PF01578	PRINTS:PR01410
PRINTS:PR01412	PANTHER:PTHR43653	PANTHER:PTHR43653:SF1	TMHMM:TMhelix	UniParc:UPI0002969DEC	SEG:seg

Description

Probable cytochrome c biosynthesis protein [Source:GMGC_GENE;Acc:GSMUA_AchrUn_randomG09060_001]

Coordinates

chrchrUn_random:-:42174308..42177086

Molecular Weight (calculated)

40705.1 Da

IEP (calculated)

8.246

GRAVY (calculated)

0.275

Length

365 amino acids

Sequence
(BLAST)

001: MSITEFAHYS LFPGLFVAFT YNKKQPPAFG AALSFFCILI PFLGLSFCHI PNNLSNYNVL TANAPFFYQI SGTWSNHEGS ILSWCWIPSF YGFLLSYRAK
101: SHNSLDEQRI SGALGIALFF SPFLSASSDP FVRNVFVCTE PLAESNPVSQ DPISAIHPPF IYAGDVANTT TSFTAGANTV VSDQDQEPIH IWILTCRLFL
201: TVGISPGSWW AHHELGRGGW WFRDPVENAS FMPRVLATAC IHSVILPRLH SFTSLLNILT LPCCVLGTSS IRSGLLAPVH SSATDDTRGI FLWRFFLFIT
301: GISMILFYQM KQQASVHITH KKEMVVARST LVHLLHSAPA PLWYGIISPA NHSIKEKHLV LKRHQ

Best Arabidopsis Sequence Match ( ATMG00960.1 )
(BLAST)

001: VDTGREQAKR VVRNGKKETT TSPLCWTAGA NTVVSDQDQE PIRIWILTCW WFLTVGILPG SWWAYHELGR GGWWFRDPVE NASFMPRVLA TARIHSVILP
101: LLHSWTSFLN IVTFPCCVSG TFSIRSGLLA PVHSFATDDT RGIFLWWFFL LMTGISMILF YQMKQQASVR RTYKKEMVVA RSTLVHLRHS ARAQPRPVML
201: WKN

Arabidopsis Description

CCB203Cytochrome C assembly protein [Source:TAIR;Acc:ATMG00960]
SUBAcon: [peroxisome,cytosol,plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.