Factsheet for GSMUA_Achr5P20920_001

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane, vacuole, cytosol

Predictor Summary:

plastid 1
mitochondrion 2
plasma membrane 2
extracellular 1
endoplasmic reticulum 1
vacuole 2
golgi 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, plasma membrane, vacuole
Any Predictor:	cytosol, mitochondrion, plastid, secretory
BaCelLo:	plastid
EpiLoc:	mitochondrion
MultiLoc:	plasma membrane
Plant-mPloc:	mitochondrion
PProwler:	secretory
WoLF PSORT:	cytosol
YLoc:	vacuole

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_AchrUn_...
GSMUA_AchrUn_...

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
ATMG00830.1	GSMUA_AchrUn_...	ATMG00180.1	18644794
ATMG00830.1	GSMUA_AchrUn_...	ATMG00960.1	18644794

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
HORVU3Hr1G115160.1	Barley	endoplasmic reticulum	31.48	68.0
GSMUA_AchrUn_...	Banana	plasma membrane	48.15	21.37
TraesCS4B01G146000.1	Wheat	cytosol, plasma membrane, vacuole	46.3	18.75
CDY45509	Canola	endoplasmic reticulum, vacuole	42.59	18.11
ATMG00830.1	Thale cress	endoplasmic reticulum, vacuole	41.98	17.8
VIT_00s0332g00130.t01	Wine grape	endoplasmic reticulum, plasma membrane, vacuole	43.21	16.05
HORVU6Hr1G037030.1	Barley	cytosol	1.23	3.39
Solyc06g065880.1.1	Tomato	cytosol	1.23	2.9
VIT_00s0246g00060.t01	Wine grape	mitochondrion	5.56	2.3
PGSC0003DMT400043522	Potato	peroxisome	3.09	1.14
CDY17583	Canola	mitochondrion	1.23	1.01
HORVU3Hr1G115140.1	Barley	plasma membrane, plastid, vacuole	0.0	0.0

Protein Annotations

EnsemblPlants:GSMUA_Achr5P20920_001	EnsemblPlants:GSMUA_Achr5T20920_001	EnsemblPlantsGene:GSMUA_Achr5G20920_001	GO:GO:0003674	GO:GO:0005215	GO:GO:0005575
GO:GO:0006810	GO:GO:0008150	GO:GO:0009987	GO:GO:0015232	GO:GO:0015886	GO:GO:0016020
GO:GO:0016021	GO:GO:0016043	GO:GO:0017004	InterPro:Cyt_c_biogenesis_plant	PANTHER:PTHR30009	PANTHER:PTHR30009:SF23
PRINTS:PR01412	TMHMM:TMhelix	UniParc:UPI000295E192	UniProt:M0T0C1	MapMan:2.4.4.2.3.2	:

Description

Hypothetical protein [Source:GMGC_GENE;Acc:GSMUA_Achr5G20920_001]

Coordinates

chr5:-:22821190..22821678

Molecular Weight (calculated)

18437.3 Da

IEP (calculated)

6.929

GRAVY (calculated)

0.243

Length

162 amino acids

Sequence
(BLAST)

001: MMGITKLKFG NEHKMSTNSF SHYLLFLGLF VEFTYNKKHP PEFGAVLAFW CILIPFLGLS FCYILNNLSD YNVLTASAPF FYQISGTWSN HEGSILSWCW
101: IPSLMDSFFV TPVSICCMDW IHAGRVMDQH ESGTQSVDPC SITKMNVKFS VIVSPHKTHD FA

Best Arabidopsis Sequence Match ( ATMG00830.1 )
(BLAST)

001: MSISIYEFFH YSLFPGLFVA FTYNKKQPPA FGAAPAFWCI LLSFLGLSFC HIPNNLSNYN VLTANAPFFY QISGTWSNHE GSILLWCRIP NFYGFFLCYR
101: GRPQSHNVLK QGGHRESLFF FFVSNFVKNS ILSLPRYEQE SGLKNQLYTP FVLRTLVDSE LRSRRNRTFD GPALFYAPLY PERKIKNPLD AWRSRGSREG
201: KRTHPLLHLA RDDKERASSI DEQRIDGALG IALFFSPFLS ASSDPFVRNF FVCTEPLAES NPVPQDPISA IHPPCIYAGD VASAEGFGLC RSKMMNGIVA
301: LHSPPMRKDA AEKNGTLLRS AGCVGSRITS ELFTLKFKHV GAKCYPALLL RSNRSPLMLL RRRFFAFSSF WAGARSHSTK RY

Arabidopsis Description

CCB382CcmFN1 [Source:UniProtKB/TrEMBL;Acc:G1C2S2]
SUBAcon: [endoplasmic reticulum,vacuole]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.