Factsheet for VIT_00s0246g00060.t01

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 2
mitochondrion 6

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
HORVU3Hr1G115140.1	Barley	plasma membrane, plastid, vacuole	20.15	94.05
CDY17583	Canola	mitochondrion	44.64	87.94
VIT_00s0332g00130.t01	Wine grape	endoplasmic reticulum, plasma membrane, vacuole	81.89	73.62
Solyc02g050290.1.1	Tomato	cytosol	16.58	59.63
PGSC0003DMT400043522	Potato	peroxisome	64.29	57.27
CDY45509	Canola	endoplasmic reticulum, vacuole	44.64	45.93
ATMG00830.1	Thale cress	endoplasmic reticulum, vacuole	43.37	44.5
TraesCS4B01G146000.1	Wheat	cytosol, plasma membrane, vacuole	44.9	44.0
HORVU6Hr1G037030.1	Barley	cytosol	5.36	35.59
GSMUA_Achr5P20920_001	Banana	cytosol, plasma membrane, vacuole	2.3	5.56
HORVU3Hr1G115160.1	Barley	endoplasmic reticulum	0.0	0.0

Protein Annotations

MapMan:2.4.4.2.3.2	EntrezGene:7498641	wikigene:7498641	ProteinID:ACS15223	ProteinID:ACS15223.1	EMBL:AM446904
ProteinID:CAN82856	ProteinID:CAN82856.1	ProteinID:CAQ77573	ProteinID:CAQ77573.1	ProteinID:CCB55900	ProteinID:CCB55900.1
InterPro:Cyt_c_assembly	InterPro:Cyt_c_biogenesis	InterPro:Cyt_c_biogenesis_plant	UniProt:F6HMJ5	EMBL:FM179380	EMBL:FN595993
GO:GO:0003674	GO:GO:0005215	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0005739	GO:GO:0006810	GO:GO:0008150	GO:GO:0009987	GO:GO:0015232
GO:GO:0015886	GO:GO:0016020	GO:GO:0016021	GO:GO:0016043	GO:GO:0017004	GO:GO:0020037
EMBL:GQ220324	PFAM:PF01578	PRINTS:PR01410	PRINTS:PR01412	PANTHER:PTHR43653	PANTHER:PTHR43653:SF1
TMHMM:TMhelix	UniParc:UPI000210A449	ArrayExpress:VIT_00s0246g00060	EnsemblPlantsGene:VIT_00s0246g00060	EnsemblPlants:VIT_00s0246g00060.t01	unigene:Vvi.16474
EntrezGene:ccmFN	wikigene:ccmFN	SEG:seg	:	:	:

Description

No Description!

Coordinates

chrUn:-:17118760..17121216

Molecular Weight (calculated)

44238.8 Da

IEP (calculated)

10.479

GRAVY (calculated)

-0.026

Length

392 amino acids

Sequence
(BLAST)

001: MSFAPLGARR SRGSREGKRT HPLLHLARDD KERASSIDEQ WIDGALGIAL FFSPFLSASS DPFVRNFFVC TEPLAESNPV PQDPISAIHP PCIYAGDVAS
101: AMGFGLCRSK IWNGIVAFHS PPMQKDAAEK NGTLLRSAGY VGSRITSELF TLKFKHVDVK CYPALLLRTN ISLLMQLRRR FFAFSSLWTG ALVDMRREQA
201: KRVVRNGKKD TTTSPLCWTA DANTVVSDQD QEPILIWILT CRWFLTVGIL PGSWWAHHEL GRGGWWFRDP VENASFMPRV LATARIHSVI RPPLYYWTSL
301: LNIVTLPCCV SGTSYIRSGL LAPVHSFATD DTRGIFLWRF FLLMTGISLI LLFQMKLQAS GRITYKKDMV VVRRHLRHSA RAQPSPGMLW KN

Best Arabidopsis Sequence Match ( ATMG00960.1 )
(BLAST)

001: VDTGREQAKR VVRNGKKETT TSPLCWTAGA NTVVSDQDQE PIRIWILTCW WFLTVGILPG SWWAYHELGR GGWWFRDPVE NASFMPRVLA TARIHSVILP
101: LLHSWTSFLN IVTFPCCVSG TFSIRSGLLA PVHSFATDDT RGIFLWWFFL LMTGISMILF YQMKQQASVR RTYKKEMVVA RSTLVHLRHS ARAQPRPVML
201: WKN

Arabidopsis Description

CCB203Cytochrome C assembly protein [Source:TAIR;Acc:ATMG00960]
SUBAcon: [peroxisome,cytosol,plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.