Factsheet for PGSC0003DMT400043522

Subcellular Localization

min:

: max

Winner_takes_all: peroxisome

Predictor Summary:

plastid 2
mitochondrion 4
peroxisome 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
HORVU3Hr1G115140.1	Barley	plasma membrane, plastid, vacuole	18.86	98.81
CDY17583	Canola	mitochondrion	40.45	89.45
Solyc06g065880.1.1	Tomato	cytosol	12.95	82.61
VIT_00s0246g00060.t01	Wine grape	mitochondrion	57.27	64.29
CDY45509	Canola	endoplasmic reticulum, vacuole	49.09	56.69
ATMG00830.1	Thale cress	endoplasmic reticulum, vacuole	48.41	55.76
TraesCS4B01G146000.1	Wheat	cytosol, plasma membrane, vacuole	46.36	51.0
VIT_00s0332g00130.t01	Wine grape	endoplasmic reticulum, plasma membrane, vacuole	47.05	47.48
HORVU6Hr1G037030.1	Barley	cytosol	1.36	10.17
GSMUA_Achr5P20920_001	Banana	cytosol, plasma membrane, vacuole	1.14	3.09
HORVU3Hr1G115160.1	Barley	endoplasmic reticulum	0.0	0.0

Protein Annotations

MapMan:2.4.4.2.3.2	InterPro:Cyt_c_assembly	InterPro:Cyt_c_biogenesis	InterPro:Cyt_c_biogenesis_plant	GO:GO:0003674	GO:GO:0005215
GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005739
GO:GO:0006810	GO:GO:0008150	GO:GO:0009987	GO:GO:0015232	GO:GO:0015886	GO:GO:0016020
GO:GO:0016021	GO:GO:0016043	GO:GO:0017004	GO:GO:0020037	UniProt:M1BES8	PFAM:PF01578
EnsemblPlantsGene:PGSC0003DMG400016897	PGSC:PGSC0003DMG400016897	EnsemblPlants:PGSC0003DMT400043522	PRINTS:PR01410	PRINTS:PR01412	PANTHER:PTHR30009
PANTHER:PTHR30009:SF23	TMHMM:TMhelix	UniParc:UPI0002949925	SEG:seg	:	:

Description

Cytochrome c maturation protein CcmFN [Source:PGSC_GENE;Acc:PGSC0003DMG400016897]

Coordinates

chr5:+:22900257..22901579

Molecular Weight (calculated)

49133.8 Da

IEP (calculated)

11.071

GRAVY (calculated)

-0.068

Length

440 amino acids

Sequence
(BLAST)

001: MKSQLYTPFV LRTLVDSELR SRRNRTFDGP ALFYAPLYPE RKMSFAPLGA RRSRGSREGK RMLHLARDDK ERASSIDEQR IDGALGIALF FSPFLSASSD
101: PFVRNFFVCT EPLAESNPVP QDPISAIHPP CIYAGDVASA MGFGLCRSKM MNGIVALHSP PMRKDAAEKN GTLFRSVGCV GSRITSELFT LKFKHVGAKC
201: YPALLLRSNR SLLMLLRRRF FALSSLWTGA LVDTGREQAK RVVRNGKKDT TTSPLCWTAG ANTVVSDQDQ EPIRIWILTC RWFLTVGILP GSWRRSALCS
301: NPSPVCIGNL SSGFCDIRRS RLPSRSRSAI RRPPIPVTKL VLHQGWHAGT LSELKSHSTV RRVVLAITRI AFLHFFSLFD PFCPVVSLPF SLAFIVVINV
401: QRHFIQFQVS TTASQYKTQL NELGSNPTMS GTCLRFNSKV

Best Arabidopsis Sequence Match ( ATMG00830.1 )
(BLAST)

001: MSISIYEFFH YSLFPGLFVA FTYNKKQPPA FGAAPAFWCI LLSFLGLSFC HIPNNLSNYN VLTANAPFFY QISGTWSNHE GSILLWCRIP NFYGFFLCYR
101: GRPQSHNVLK QGGHRESLFF FFVSNFVKNS ILSLPRYEQE SGLKNQLYTP FVLRTLVDSE LRSRRNRTFD GPALFYAPLY PERKIKNPLD AWRSRGSREG
201: KRTHPLLHLA RDDKERASSI DEQRIDGALG IALFFSPFLS ASSDPFVRNF FVCTEPLAES NPVPQDPISA IHPPCIYAGD VASAEGFGLC RSKMMNGIVA
301: LHSPPMRKDA AEKNGTLLRS AGCVGSRITS ELFTLKFKHV GAKCYPALLL RSNRSPLMLL RRRFFAFSSF WAGARSHSTK RY

Arabidopsis Description

CCB382CcmFN1 [Source:UniProtKB/TrEMBL;Acc:G1C2S2]
SUBAcon: [endoplasmic reticulum,vacuole]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.