Subcellular Localization
min:
: max
Winner_takes_all: plasma membrane, vacuole, cytosol
Predictor Summary:
Predictor Summary:
- plasma membrane 2
- extracellular 1
- endoplasmic reticulum 1
- vacuole 2
- golgi 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| HORVU3Hr1G115140.1 | Barley | plasma membrane, plastid, vacuole | 20.75 | 98.81 |
| HORVU3Hr1G115160.1 | Barley | endoplasmic reticulum | 16.0 | 85.33 |
| CDY17583 | Canola | mitochondrion | 40.75 | 81.91 |
| CDY45509 | Canola | endoplasmic reticulum, vacuole | 75.0 | 78.74 |
| ATMG00830.1 | Thale cress | endoplasmic reticulum, vacuole | 74.0 | 77.49 |
| TraesCS3B01G374000.1 | Wheat | endoplasmic reticulum, plasma membrane, vacuole | 12.0 | 72.73 |
| TraesCS1B01G457800.1 | Wheat | endoplasmic reticulum, plasma membrane, vacuole | 17.0 | 56.67 |
| Solyc06g065880.1.1 | Tomato | cytosol | 9.25 | 53.62 |
| VIT_00s0332g00130.t01 | Wine grape | endoplasmic reticulum, plasma membrane, vacuole | 57.0 | 52.29 |
| PGSC0003DMT400043522 | Potato | peroxisome | 51.0 | 46.36 |
| GSMUA_Achr5P20920_001 | Banana | cytosol, plasma membrane, vacuole | 18.75 | 46.3 |
| VIT_00s0246g00060.t01 | Wine grape | mitochondrion | 44.0 | 44.9 |
| TraesCS1B01G451000.1 | Wheat | mitochondrion | 25.5 | 34.58 |
| TraesCS1B01G457900.1 | Wheat | mitochondrion | 25.25 | 34.24 |
| HORVU6Hr1G037030.1 | Barley | cytosol | 0.25 | 1.69 |
Protein Annotations
| MapMan:2.4.4.2.3.2 | InterPro:Cyt_c_assembly | InterPro:Cyt_c_biogenesis | InterPro:Cyt_c_biogenesis_plant | GO:GO:0003674 | GO:GO:0005215 |
| GO:GO:0005488 | GO:GO:0005575 | GO:GO:0006810 | GO:GO:0008150 | GO:GO:0009987 | GO:GO:0015232 |
| GO:GO:0015886 | GO:GO:0016020 | GO:GO:0016043 | GO:GO:0017004 | GO:GO:0020037 | PFAM:PF01578 |
| PRINTS:PR01410 | PRINTS:PR01412 | PANTHER:PTHR30009 | PANTHER:PTHR30009:SF23 | TMHMM:TMhelix | EnsemblPlantsGene:TraesCS4B01G146000 |
| EnsemblPlants:TraesCS4B01G146000.1 | SEG:seg | : | : | : | : |
Description
No Description!
Coordinates
chr4B:-:209081725..209082927
Molecular Weight (calculated)
45030.4 Da
IEP (calculated)
10.841
GRAVY (calculated)
-0.174
Length
400 amino acids
Sequence
(BLAST)
(BLAST)
001: MMGITKHKFG NEHEMSINEF SHYSLFPGLF VAFTYNKKQP PAFGAALAFW CILLPFLGLS FRHIPNNLSN YNVLTATAPF FYQISGTWSN HEGSILSWCW
101: IPSFYGFLFC YRGRPQSHNV SKRRGYRETL IFSFVSNFMK NSILSLQQKS WAAPQLYTPF ARRTLVDSEL RSQSKHPFNG PALFNAPLDP VLKMSFALLG
201: AGRSRGSREG KRTNLLLHLA RDEKERASYI NEQQIDGALG IALFFSPFLS ASSDPFVQNF FVRTEPLAES NPVPQDPISA IHPPCIYAGD VASAMGFGLC
301: RSKMMNGIVA LHSPPMRKDA AEKNGTRLRS SGCVGSHIRS SLFTRSFKHF VGGAPALLLR SNRSLLMQLR RRFFAFSSLW TGALMDTRRE QAKRVVRNGK
101: IPSFYGFLFC YRGRPQSHNV SKRRGYRETL IFSFVSNFMK NSILSLQQKS WAAPQLYTPF ARRTLVDSEL RSQSKHPFNG PALFNAPLDP VLKMSFALLG
201: AGRSRGSREG KRTNLLLHLA RDEKERASYI NEQQIDGALG IALFFSPFLS ASSDPFVQNF FVRTEPLAES NPVPQDPISA IHPPCIYAGD VASAMGFGLC
301: RSKMMNGIVA LHSPPMRKDA AEKNGTRLRS SGCVGSHIRS SLFTRSFKHF VGGAPALLLR SNRSLLMQLR RRFFAFSSLW TGALMDTRRE QAKRVVRNGK
001: MSISIYEFFH YSLFPGLFVA FTYNKKQPPA FGAAPAFWCI LLSFLGLSFC HIPNNLSNYN VLTANAPFFY QISGTWSNHE GSILLWCRIP NFYGFFLCYR
101: GRPQSHNVLK QGGHRESLFF FFVSNFVKNS ILSLPRYEQE SGLKNQLYTP FVLRTLVDSE LRSRRNRTFD GPALFYAPLY PERKIKNPLD AWRSRGSREG
201: KRTHPLLHLA RDDKERASSI DEQRIDGALG IALFFSPFLS ASSDPFVRNF FVCTEPLAES NPVPQDPISA IHPPCIYAGD VASAEGFGLC RSKMMNGIVA
301: LHSPPMRKDA AEKNGTLLRS AGCVGSRITS ELFTLKFKHV GAKCYPALLL RSNRSPLMLL RRRFFAFSSF WAGARSHSTK RY
101: GRPQSHNVLK QGGHRESLFF FFVSNFVKNS ILSLPRYEQE SGLKNQLYTP FVLRTLVDSE LRSRRNRTFD GPALFYAPLY PERKIKNPLD AWRSRGSREG
201: KRTHPLLHLA RDDKERASSI DEQRIDGALG IALFFSPFLS ASSDPFVRNF FVCTEPLAES NPVPQDPISA IHPPCIYAGD VASAEGFGLC RSKMMNGIVA
301: LHSPPMRKDA AEKNGTLLRS AGCVGSRITS ELFTLKFKHV GAKCYPALLL RSNRSPLMLL RRRFFAFSSF WAGARSHSTK RY
Arabidopsis Description
CCB382CcmFN1 [Source:UniProtKB/TrEMBL;Acc:G1C2S2]
SUBAcon: [endoplasmic reticulum,vacuole]
SUBAcon: [endoplasmic reticulum,vacuole]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.