Subcellular Localization
min:
: max
Winner_takes_all: endoplasmic reticulum, extracellular
Predictor Summary:
Predictor Summary:
- nucleus 1
- plastid 2
- extracellular 5
- endoplasmic reticulum 5
- vacuole 4
- plasma membrane 4
- golgi 4
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCSU01G050200.1 | Wheat | endoplasmic reticulum, extracellular | 98.09 | 98.09 |
| TraesCS6B01G131800.1 | Wheat | endoplasmic reticulum, extracellular | 98.09 | 97.62 |
| TraesCS7B01G429400.1 | Wheat | extracellular | 97.13 | 97.13 |
| HORVU1Hr1G025070.1 | Barley | extracellular | 91.87 | 87.67 |
| TraesCS1D01G128300.1 | Wheat | extracellular, plasma membrane, vacuole | 91.39 | 69.45 |
| TraesCS5D01G003300.1 | Wheat | extracellular, plasma membrane, vacuole | 89.95 | 68.36 |
| TraesCS3D01G197300.1 | Wheat | extracellular | 89.47 | 68.0 |
| TraesCS4D01G146500.1 | Wheat | endoplasmic reticulum | 88.52 | 67.52 |
| TraesCS4D01G161300.1 | Wheat | plasma membrane | 89.0 | 67.39 |
| TraesCS3D01G103300.1 | Wheat | endoplasmic reticulum, vacuole | 91.39 | 64.97 |
| VIT_03s0063g02270.t01 | Wine grape | extracellular | 20.57 | 62.32 |
| BAC19894 | Rice | endoplasmic reticulum, plasma membrane | 89.95 | 43.12 |
| PGSC0003DMT400087800 | Potato | cytosol, mitochondrion, plastid, vacuole | 69.86 | 36.32 |
| Solyc11g039360.1.1 | Tomato | vacuole | 58.37 | 35.47 |
| ATMG00180.1 | Thale cress | plasma membrane | 73.68 | 34.07 |
| CDY45515 | Canola | mitochondrion | 32.06 | 32.84 |
| CDY17587 | Canola | mitochondrion | 32.06 | 32.84 |
| AT2G07815.1 | Thale cress | mitochondrion | 32.06 | 24.01 |
| GSMUA_AchrUn_... | Banana | endoplasmic reticulum, extracellular, vacuole | 33.49 | 21.02 |
Protein Annotations
| EnsemblPlants:TraesCS6D01G324000.1 | EnsemblPlantsGene:TraesCS6D01G324000 | PANTHER:PTHR36010 | SEG:seg | TMHMM:TMhelix | MapMan:35.1 |
Description
No Description!
Coordinates
chr6D:+:430482761..430483390
Molecular Weight (calculated)
23768.4 Da
IEP (calculated)
11.076
GRAVY (calculated)
-0.002
Length
209 amino acids
Sequence
(BLAST)
(BLAST)
001: MVQLQNFFFF ITSMVVPRGT AAPVLLKWFV SRDVPTGASS SNGTIIPIPI PLFPFLVYLH LRKFIRSMDR EKSGVLVKAS RPILLPDKME RSSSARNALF
101: RFVPVLHFLI IESMGDLSYL ESFCGLLCLQ FFRTLFSLPR DRSAKRERAL RSKGQTLRPK GNEQQNDKMR CPGYPHIERR VEGFGTVAFP APPLVEWCLF
201: GGCATRKRA
101: RFVPVLHFLI IESMGDLSYL ESFCGLLCLQ FFRTLFSLPR DRSAKRERAL RSKGQTLRPK GNEQQNDKMR CPGYPHIERR VEGFGTVAFP APPLVEWCLF
201: GGCATRKRA
001: MVQLHNFFFF IIFMVVPCGT AAPVLLKWFV SRDVPTGAPF SNGTIIPIPI SSFPLLVYLH SRKIIRSMDG AKSGVLVRAS RPILLPDIIG RSSSETRARK
101: ALFFFVPVLH FRLLESKGDF SYLESFCGVL CLLFFRTFLF LARDRSAKRE RARRRKGQTL RPNGNEQRRN DKMRCSGHPH LDLERRVEGF GPLAFPVPPE
201: LGGACVGGVP PEIGLEALAL PRSRQLMAMA VGHDYYQKVP MKMNISHGGV CICMLGVLLS NTKKIQFTQR LPLGYELHMG KERCCLRGLD HLHGPTFHSI
301: CGNLMIYKPS LTNDRLMFEH DESLHADLLL INFPASYKNG KLEHFLHWWM KNRKHNNFWL TMFPEKRYFR ERTSTAEVAI HTNLFTDLYA SIGTGSSRTG
401: GWYTTIMKLP FIFFIRIGFM LASLGGSPSL LRQLQKDKLR WNRESSVEFI IA
101: ALFFFVPVLH FRLLESKGDF SYLESFCGVL CLLFFRTFLF LARDRSAKRE RARRRKGQTL RPNGNEQRRN DKMRCSGHPH LDLERRVEGF GPLAFPVPPE
201: LGGACVGGVP PEIGLEALAL PRSRQLMAMA VGHDYYQKVP MKMNISHGGV CICMLGVLLS NTKKIQFTQR LPLGYELHMG KERCCLRGLD HLHGPTFHSI
301: CGNLMIYKPS LTNDRLMFEH DESLHADLLL INFPASYKNG KLEHFLHWWM KNRKHNNFWL TMFPEKRYFR ERTSTAEVAI HTNLFTDLYA SIGTGSSRTG
401: GWYTTIMKLP FIFFIRIGFM LASLGGSPSL LRQLQKDKLR WNRESSVEFI IA
Arabidopsis Description
CCB452CcmFC [Source:UniProtKB/TrEMBL;Acc:G1C2X7]
SUBAcon: [plasma membrane]
SUBAcon: [plasma membrane]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.