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Wheat
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Wheat
Subcellular Localization
min:
: max

 
Winner_takes_all: plasma membrane, extracellular, vacuole

Predictor Summary:
  • plastid 1
  • extracellular 5
  • endoplasmic reticulum 4
  • vacuole 5
  • plasma membrane 5
  • golgi 4
Predictors GFP MS/MS Papers
Winner Takes All:extracellular, plasma membrane, vacuole
Any Predictor:plastid, secretory
ChloroP:plastid
iPSORT:secretory
MultiLoc:extracellular
Predotar:secretory
PProwler:secretory
TargetP:secretory
WoLF PSORT:vacuole
YLoc:plasma membrane
PPI

Inferred distinct locusB in Crop

locusBlocations
TraesCS1B01G451000.1
TraesCS2A01G239800.1
TraesCS6D01G200900.1
TraesCS6D01G375100.1
TraesCS7D01G238600.1
TraesCS7D01G533300.1

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
ATMG00180.1 TraesCS1B01G451000.1 ATMG00960.1 18644794
ATMG00180.1 TraesCS2A01G239800.1 ATMG00960.1 18644794
ATMG00180.1 TraesCS6D01G200900.1 ATMG00960.1 18644794
ATMG00180.1 TraesCS6D01G375100.1 ATMG00960.1 18644794
ATMG00180.1 TraesCS7D01G238600.1 ATMG00960.1 18644794
ATMG00180.1 TraesCS7D01G533300.1 ATMG00960.1 18644794
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
HORVU7Hr1G067010.1 Barley extracellular, plasma membrane, vacuole 97.09 96.74
TraesCS1D01G128300.1 Wheat extracellular, plasma membrane, vacuole 96.36 96.36
TraesCS3D01G197300.1 Wheat extracellular 95.64 95.64
TraesCS2A01G509000.1 Wheat endoplasmic reticulum, extracellular 95.27 95.62
TraesCS6B01G357400.1 Wheat extracellular, plasma membrane, vacuole 93.45 94.14
TraesCS4D01G146500.1 Wheat endoplasmic reticulum 93.09 93.43
TraesCS4D01G161300.1 Wheat plasma membrane 93.45 93.12
TraesCS6D01G324000.1 Wheat endoplasmic reticulum, extracellular 68.36 89.95
TraesCS3D01G103300.1 Wheat endoplasmic reticulum, vacuole 95.27 89.12
VIT_03s0063g02270.t01 Wine grape extracellular 15.64 62.32
BAC19894 Rice endoplasmic reticulum, plasma membrane 88.73 55.96
Solyc11g039360.1.1 Tomato vacuole 58.91 47.09
PGSC0003DMT400087800 Potato cytosol, mitochondrion, plastid, vacuole 68.0 46.52
ATMG00180.1 Thale cress plasma membrane 72.36 44.03
GSMUA_AchrUn_... Banana endoplasmic reticulum, extracellular, vacuole 40.73 33.63
CDY45515 Canola mitochondrion 24.0 32.35
CDY17587 Canola mitochondrion 24.0 32.35
AT2G07815.1 Thale cress mitochondrion 24.0 23.66
Protein Annotations
EnsemblPlants:TraesCS5D01G003300.1EnsemblPlantsGene:TraesCS5D01G003300PANTHER:PTHR36010SEG:segTMHMM:TMhelixMapMan:35.1
Description
No Description!
Coordinates
chr5D:+:3135889..3136720
Molecular Weight (calculated)
30584.8 Da
IEP (calculated)
10.605
GRAVY (calculated)
0.097
Length
275 amino acids
Sequence
(BLAST)
001: MVQLQNFFFF ITSMVVPRGT AAPVLLKWFV SRDVPTGISS SNGTIIPIPI PLFPFLVYLH LRKFIRSMDR AKSGVLVKAS RPILLPDKME RSSSTRNALF
101: RFVPVLHFLI IESMGDLSYL ESFCGLLCLQ FFRTLFSLPR DRSAKRERAL RSKGQTLRPK GNEQQNDKLR CPRHPHIERR VEGYGPVAFP APPSSSGAYL
201: GGVPPESGLE ALALPTSRLL MAVGHDYYKK VKMNLSISHG GVCIFMLGVL LSCDPMAYVR PVAHASYSIC SGRAA
Best Arabidopsis Sequence Match ( ATMG00180.1 )
(BLAST)
001: MVQLHNFFFF IIFMVVPCGT AAPVLLKWFV SRDVPTGAPF SNGTIIPIPI SSFPLLVYLH SRKIIRSMDG AKSGVLVRAS RPILLPDIIG RSSSETRARK
101: ALFFFVPVLH FRLLESKGDF SYLESFCGVL CLLFFRTFLF LARDRSAKRE RARRRKGQTL RPNGNEQRRN DKMRCSGHPH LDLERRVEGF GPLAFPVPPE
201: LGGACVGGVP PEIGLEALAL PRSRQLMAMA VGHDYYQKVP MKMNISHGGV CICMLGVLLS NTKKIQFTQR LPLGYELHMG KERCCLRGLD HLHGPTFHSI
301: CGNLMIYKPS LTNDRLMFEH DESLHADLLL INFPASYKNG KLEHFLHWWM KNRKHNNFWL TMFPEKRYFR ERTSTAEVAI HTNLFTDLYA SIGTGSSRTG
401: GWYTTIMKLP FIFFIRIGFM LASLGGSPSL LRQLQKDKLR WNRESSVEFI IA
Arabidopsis Description
CCB452CcmFC [Source:UniProtKB/TrEMBL;Acc:G1C2X7]
SUBAcon: [plasma membrane]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.