Factsheet for TraesCS6B01G357400.1

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane, extracellular, vacuole

Predictor Summary:

plastid 1
extracellular 5
endoplasmic reticulum 4
vacuole 5
plasma membrane 5
golgi 4

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular, plasma membrane, vacuole
Any Predictor:	plastid, secretory
ChloroP:	plastid
iPSORT:	secretory
MultiLoc:	extracellular
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	vacuole
YLoc:	plasma membrane

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS1B01G451000.1
TraesCS2A01G239800.1
TraesCS6D01G200900.1
TraesCS6D01G375100.1
TraesCS7D01G238600.1
TraesCS7D01G533300.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
ATMG00180.1	TraesCS1B01G451000.1	ATMG00960.1	18644794
ATMG00180.1	TraesCS2A01G239800.1	ATMG00960.1	18644794
ATMG00180.1	TraesCS6D01G200900.1	ATMG00960.1	18644794
ATMG00180.1	TraesCS6D01G375100.1	ATMG00960.1	18644794
ATMG00180.1	TraesCS7D01G238600.1	ATMG00960.1	18644794
ATMG00180.1	TraesCS7D01G533300.1	ATMG00960.1	18644794

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
HORVU7Hr1G067010.1	Barley	extracellular, plasma membrane, vacuole	96.34	95.29
TraesCS1B01G475500.1	Wheat	extracellular, plasma membrane, vacuole	95.97	95.27
TraesCS3B01G121800.1	Wheat	extracellular, plasma membrane, vacuole	95.6	94.57
TraesCS1B01G188800.1	Wheat	extracellular, plasma membrane, vacuole	95.24	94.55
TraesCS1B01G352800.1	Wheat	extracellular	94.87	94.18
TraesCS2A01G509000.1	Wheat	endoplasmic reticulum, extracellular	94.51	94.16
TraesCS5D01G003300.1	Wheat	extracellular, plasma membrane, vacuole	94.14	93.45
TraesCS6B01G232500.1	Wheat	extracellular	66.3	90.95
TraesCS4D01G161300.1	Wheat	plasma membrane	91.94	90.94
TraesCS7B01G429400.1	Wheat	extracellular	68.13	89.0
TraesCS6B01G131800.1	Wheat	endoplasmic reticulum, extracellular	67.77	88.1
TraesCS1B01G065500.1	Wheat	extracellular	65.2	85.99
TraesCS6B01G131500.1	Wheat	endoplasmic reticulum, extracellular	69.23	85.91
TraesCS3B01G121300.1	Wheat	endoplasmic reticulum	68.13	84.55
TraesCS7B01G047700.1	Wheat	endoplasmic reticulum, extracellular, vacuole	79.49	82.2
VIT_03s0063g02270.t01	Wine grape	extracellular	15.75	62.32
BAC19894	Rice	endoplasmic reticulum, plasma membrane	87.55	54.82
Solyc11g039360.1.1	Tomato	vacuole	58.61	46.51
PGSC0003DMT400087800	Potato	cytosol, mitochondrion, plastid, vacuole	68.13	46.27
ATMG00180.1	Thale cress	plasma membrane	71.79	43.36
GSMUA_AchrUn_...	Banana	endoplasmic reticulum, extracellular, vacuole	40.66	33.33
CDY45515	Canola	mitochondrion	24.54	32.84
CDY17587	Canola	mitochondrion	24.54	32.84
AT2G07815.1	Thale cress	mitochondrion	24.54	24.01

Protein Annotations

EnsemblPlants:TraesCS6B01G357400.1

EnsemblPlantsGene:TraesCS6B01G357400

PANTHER:PTHR36010

SEG:seg

TMHMM:TMhelix

MapMan:35.1

Description

No Description!

Coordinates

chr6B:+:625649936..625650760

Molecular Weight (calculated)

30439.6 Da

IEP (calculated)

10.582

GRAVY (calculated)

0.091

Length

273 amino acids

Sequence
(BLAST)

001: MVQLQNFFFF ITSMVVPRGT APVLLKWFVS RDVPTGASSS NGTIIPIPIP LFPFLVYLHL RKFIRSMDRA KSGVLVKASR PILLPEKTER SSSARNALFR
101: FVPILHFLII ESMGDLSYLE SFRGLLYLQF FHTLFSLPRD RSAKRERVLR SKGQTLRPKG NEQQNDKMRC PGHPHIERRV EGFGPVAFPP PSSSGACLGG
201: VPLESGLEAL ALPTSRLLMA VGHDYYKKEK MNLFISHGGV CIFMLGVLLS CDPMAYVRPV AHASYSICSG RAA

Best Arabidopsis Sequence Match ( ATMG00180.1 )
(BLAST)

001: MVQLHNFFFF IIFMVVPCGT AAPVLLKWFV SRDVPTGAPF SNGTIIPIPI SSFPLLVYLH SRKIIRSMDG AKSGVLVRAS RPILLPDIIG RSSSETRARK
101: ALFFFVPVLH FRLLESKGDF SYLESFCGVL CLLFFRTFLF LARDRSAKRE RARRRKGQTL RPNGNEQRRN DKMRCSGHPH LDLERRVEGF GPLAFPVPPE
201: LGGACVGGVP PEIGLEALAL PRSRQLMAMA VGHDYYQKVP MKMNISHGGV CICMLGVLLS NTKKIQFTQR LPLGYELHMG KERCCLRGLD HLHGPTFHSI
301: CGNLMIYKPS LTNDRLMFEH DESLHADLLL INFPASYKNG KLEHFLHWWM KNRKHNNFWL TMFPEKRYFR ERTSTAEVAI HTNLFTDLYA SIGTGSSRTG
401: GWYTTIMKLP FIFFIRIGFM LASLGGSPSL LRQLQKDKLR WNRESSVEFI IA

Arabidopsis Description

CCB452CcmFC [Source:UniProtKB/TrEMBL;Acc:G1C2X7]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.