Factsheet for TraesCS6B01G232500.1

Subcellular Localization

min:

: max

Winner_takes_all: extracellular

Predictor Summary:

plastid 2
extracellular 6
endoplasmic reticulum 4
vacuole 4
plasma membrane 4
golgi 4

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular
Any Predictor:	plastid, secretory
ChloroP:	plastid
iPSORT:	secretory
MultiLoc:	extracellular
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plastid
YLoc:	extracellular

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS1B01G451000.1
TraesCS2A01G239800.1
TraesCS6D01G200900.1
TraesCS6D01G375100.1
TraesCS7D01G238600.1
TraesCS7D01G533300.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
ATMG00180.1	TraesCS1B01G451000.1	ATMG00960.1	18644794
ATMG00180.1	TraesCS2A01G239800.1	ATMG00960.1	18644794
ATMG00180.1	TraesCS6D01G200900.1	ATMG00960.1	18644794
ATMG00180.1	TraesCS6D01G375100.1	ATMG00960.1	18644794
ATMG00180.1	TraesCS7D01G238600.1	ATMG00960.1	18644794
ATMG00180.1	TraesCS7D01G533300.1	ATMG00960.1	18644794

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS1B01G065500.1	Wheat	extracellular	93.47	89.86
TraesCS7B01G429400.1	Wheat	extracellular	93.47	89.0
TraesCS6B01G131800.1	Wheat	endoplasmic reticulum, extracellular	93.47	88.57
TraesCS6B01G131500.1	Wheat	endoplasmic reticulum, extracellular	96.98	87.73
TraesCS3B01G121300.1	Wheat	endoplasmic reticulum	96.98	87.73
TraesCS7B01G047700.1	Wheat	endoplasmic reticulum, extracellular, vacuole	91.96	69.32
TraesCS3B01G121800.1	Wheat	extracellular, plasma membrane, vacuole	93.97	67.75
TraesCS1B01G188800.1	Wheat	extracellular, plasma membrane, vacuole	93.47	67.64
TraesCS1B01G475500.1	Wheat	extracellular, plasma membrane, vacuole	92.46	66.91
TraesCS1B01G352800.1	Wheat	extracellular	91.96	66.55
TraesCS6B01G357400.1	Wheat	extracellular, plasma membrane, vacuole	90.95	66.3
TraesCS4D01G146500.1	Wheat	endoplasmic reticulum	90.95	66.06
VIT_03s0063g02270.t01	Wine grape	extracellular	21.61	62.32
TraesCS1A01G145400.1	Wheat	plasma membrane, vacuole	82.91	60.44
BAC19894	Rice	endoplasmic reticulum, plasma membrane	91.96	41.97
PGSC0003DMT400087800	Potato	cytosol, mitochondrion, plastid, vacuole	72.36	35.82
Solyc11g039360.1.1	Tomato	vacuole	59.3	34.3
ATMG00180.1	Thale cress	plasma membrane	77.39	34.07
CDY45515	Canola	mitochondrion	34.17	33.33
CDY17587	Canola	mitochondrion	34.17	33.33
AT2G07815.1	Thale cress	mitochondrion	34.17	24.37
GSMUA_AchrUn_...	Banana	endoplasmic reticulum, extracellular, vacuole	34.17	20.42

Protein Annotations

EnsemblPlants:TraesCS6B01G232500.1

EnsemblPlantsGene:TraesCS6B01G232500

PANTHER:PTHR36010

SEG:seg

TMHMM:TMhelix

MapMan:35.1

Description

No Description!

Coordinates

chr6B:-:388128349..388128948

Molecular Weight (calculated)

22627.1 Da

IEP (calculated)

11.183

GRAVY (calculated)

0.019

Length

199 amino acids

Sequence
(BLAST)

001: MVQLQNFFFF ITSMVMPCGT AAPVLLKWFV SRDVPTGASS SNGTIIPIPI PLFPFLVYLH LRKFIRSMDR AKSGVLVKAS RPILLPDKME RSSSARNALF
101: RFVPVLHFLI IESMGDLSYL ESFCGLLCLQ YFHTLFSLPR DRSAKRERAL RSKGQTLRPK GNEQQNDKMR CPGHPHIERR VEGFGPIAFP PPPRRVVLV

Best Arabidopsis Sequence Match ( ATMG00180.1 )
(BLAST)

001: MVQLHNFFFF IIFMVVPCGT AAPVLLKWFV SRDVPTGAPF SNGTIIPIPI SSFPLLVYLH SRKIIRSMDG AKSGVLVRAS RPILLPDIIG RSSSETRARK
101: ALFFFVPVLH FRLLESKGDF SYLESFCGVL CLLFFRTFLF LARDRSAKRE RARRRKGQTL RPNGNEQRRN DKMRCSGHPH LDLERRVEGF GPLAFPVPPE
201: LGGACVGGVP PEIGLEALAL PRSRQLMAMA VGHDYYQKVP MKMNISHGGV CICMLGVLLS NTKKIQFTQR LPLGYELHMG KERCCLRGLD HLHGPTFHSI
301: CGNLMIYKPS LTNDRLMFEH DESLHADLLL INFPASYKNG KLEHFLHWWM KNRKHNNFWL TMFPEKRYFR ERTSTAEVAI HTNLFTDLYA SIGTGSSRTG
401: GWYTTIMKLP FIFFIRIGFM LASLGGSPSL LRQLQKDKLR WNRESSVEFI IA

Arabidopsis Description

CCB452CcmFC [Source:UniProtKB/TrEMBL;Acc:G1C2X7]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.