Factsheet for TraesCS1A01G145400.1

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane, vacuole

Predictor Summary:

plastid 2
extracellular 4
endoplasmic reticulum 4
vacuole 5
plasma membrane 5
golgi 4

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plasma membrane, vacuole
Any Predictor:	plastid, secretory
ChloroP:	plastid
iPSORT:	secretory
MultiLoc:	plastid
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	vacuole
YLoc:	plasma membrane

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS1B01G451000.1
TraesCS2A01G239800.1
TraesCS6D01G200900.1
TraesCS6D01G375100.1
TraesCS7D01G238600.1
TraesCS7D01G533300.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
ATMG00180.1	TraesCS1B01G451000.1	ATMG00960.1	18644794
ATMG00180.1	TraesCS2A01G239800.1	ATMG00960.1	18644794
ATMG00180.1	TraesCS6D01G200900.1	ATMG00960.1	18644794
ATMG00180.1	TraesCS6D01G375100.1	ATMG00960.1	18644794
ATMG00180.1	TraesCS7D01G238600.1	ATMG00960.1	18644794
ATMG00180.1	TraesCS7D01G533300.1	ATMG00960.1	18644794

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS2A01G330700.1	Wheat	extracellular	89.01	88.69
TraesCS2A01G509000.1	Wheat	endoplasmic reticulum, extracellular	87.18	86.86
TraesCS3A01G218900.3	Wheat	extracellular	86.45	86.45
TraesCS4D01G146500.1	Wheat	endoplasmic reticulum	86.45	86.13
TraesCS6B01G232500.1	Wheat	extracellular	60.44	82.91
TraesCS7B01G047700.1	Wheat	endoplasmic reticulum, extracellular, vacuole	75.46	78.03
VIT_03s0063g02270.t01	Wine grape	extracellular	14.65	57.97
BAC19894	Rice	endoplasmic reticulum, plasma membrane	81.32	50.92
PGSC0003DMT400087800	Potato	cytosol, mitochondrion, plastid, vacuole	63.0	42.79
Solyc11g039360.1.1	Tomato	vacuole	53.85	42.73
ATMG00180.1	Thale cress	plasma membrane	66.67	40.27
GSMUA_AchrUn_...	Banana	endoplasmic reticulum, extracellular, vacuole	37.36	30.63
CDY17587	Canola	mitochondrion	22.71	30.39
CDY45515	Canola	mitochondrion	22.71	30.39
AT2G07815.1	Thale cress	mitochondrion	22.71	22.22

Protein Annotations

EnsemblPlants:TraesCS1A01G145400.1	EnsemblPlantsGene:TraesCS1A01G145400	PANTHER:PTHR36010	SEG:seg	SignalP:SignalP-TM	TMHMM:TMhelix
MapMan:35.1	:	:	:	:	:

Description

No Description!

Coordinates

chr1A:-:251531995..251532820

Molecular Weight (calculated)

30287.4 Da

IEP (calculated)

10.542

GRAVY (calculated)

0.084

Length

273 amino acids

Sequence
(BLAST)

001: MVQLHNFFFF ITSMAVPRGM AASVPLKWFV NRGVPTGASS SNGTIIPIPI PLFPFLVYLH LRKFIRSMDR AKSGGLVKAS RPILLPDKME RSSSTRNALF
101: HFVPILHFLI IKSMADLSYE SFYGLLYLQF FRTLFSLPCD RSAKRERALR SKVQPVQPKG NKQQNDKMRC PGHPHIERRV EDFGPIAFPA PPSSGACLGG
201: VPPESGLEAL TLPTSRLLMV VGHDYYKKVK TNLSISHGGV CIFMLGVLLS CDSMAYVRPV AHASYSICSG RAT

Best Arabidopsis Sequence Match ( ATMG00180.1 )
(BLAST)

001: MVQLHNFFFF IIFMVVPCGT AAPVLLKWFV SRDVPTGAPF SNGTIIPIPI SSFPLLVYLH SRKIIRSMDG AKSGVLVRAS RPILLPDIIG RSSSETRARK
101: ALFFFVPVLH FRLLESKGDF SYLESFCGVL CLLFFRTFLF LARDRSAKRE RARRRKGQTL RPNGNEQRRN DKMRCSGHPH LDLERRVEGF GPLAFPVPPE
201: LGGACVGGVP PEIGLEALAL PRSRQLMAMA VGHDYYQKVP MKMNISHGGV CICMLGVLLS NTKKIQFTQR LPLGYELHMG KERCCLRGLD HLHGPTFHSI
301: CGNLMIYKPS LTNDRLMFEH DESLHADLLL INFPASYKNG KLEHFLHWWM KNRKHNNFWL TMFPEKRYFR ERTSTAEVAI HTNLFTDLYA SIGTGSSRTG
401: GWYTTIMKLP FIFFIRIGFM LASLGGSPSL LRQLQKDKLR WNRESSVEFI IA

Arabidopsis Description

CCB452CcmFC [Source:UniProtKB/TrEMBL;Acc:G1C2X7]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.