Factsheet for TraesCS6D01G375100.1

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 2
mitochondrion 6

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS1A01G145400.1
TraesCS1A01G263300.1
TraesCS1B01G065500.1
TraesCS1B01G188800.1
TraesCS1B01G273900.1
TraesCS1B01G352800.1
TraesCS1B01G475500.1
TraesCS1D01G128300.1
TraesCS1D01G263400.1
TraesCS2A01G330700.1
TraesCS2A01G509000.1
TraesCS3A01G218900.3
TraesCS3A01G405000.1
TraesCS3A01G458200.1
TraesCS3B01G121300.1
TraesCS3B01G121800.1
TraesCS3B01G438700.1
TraesCS3D01G103300.1
TraesCS3D01G197300.1
TraesCS3D01G400400.1
TraesCS3D01G451000.1
TraesCS4B01G146000.1
TraesCS4D01G146500.1
TraesCS4D01G161300.1
TraesCS5D01G003300.1
TraesCS6B01G131500.1
TraesCS6B01G131800.1
TraesCS6B01G232500.1
TraesCS6B01G357400.1
TraesCS6D01G324000.1
TraesCS7A01G278100.1
TraesCS7B01G047700.1
TraesCS7B01G175500.1
TraesCS7B01G429400.1
TraesCS7D01G277900.1
TraesCSU01G050200.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
ATMG00960.1	TraesCS1A01G263300.1	AT1G22840.1	18644794
ATMG00960.1	TraesCS1B01G273900.1	AT1G22840.1	18644794
ATMG00960.1	TraesCS1D01G263400.1	AT1G22840.1	18644794
ATMG00960.1	TraesCS3A01G405000.1	AT1G22840.1	18644794
ATMG00960.1	TraesCS3B01G438700.1	AT1G22840.1	18644794
ATMG00960.1	TraesCS3D01G400400.1	AT1G22840.1	18644794
ATMG00960.1	TraesCS3A01G458200.1	AT5G40810.1	18644794
ATMG00960.1	TraesCS3D01G451000.1	AT5G40810.1	18644794
ATMG00960.1	TraesCS7A01G278100.1	AT5G40810.1	18644794
ATMG00960.1	TraesCS7B01G175500.1	AT5G40810.1	18644794
ATMG00960.1	TraesCS7D01G277900.1	AT5G40810.1	18644794
ATMG00960.1	TraesCS1A01G145400.1	ATMG00180.1	18644794
ATMG00960.1	TraesCS1B01G065500.1	ATMG00180.1	18644794
ATMG00960.1	TraesCS1B01G188800.1	ATMG00180.1	18644794
ATMG00960.1	TraesCS1B01G352800.1	ATMG00180.1	18644794
ATMG00960.1	TraesCS1B01G475500.1	ATMG00180.1	18644794
ATMG00960.1	TraesCS1D01G128300.1	ATMG00180.1	18644794
ATMG00960.1	TraesCS2A01G330700.1	ATMG00180.1	18644794
ATMG00960.1	TraesCS2A01G509000.1	ATMG00180.1	18644794
ATMG00960.1	TraesCS3A01G218900.3	ATMG00180.1	18644794
ATMG00960.1	TraesCS3B01G121300.1	ATMG00180.1	18644794
ATMG00960.1	TraesCS3B01G121800.1	ATMG00180.1	18644794
ATMG00960.1	TraesCS3D01G103300.1	ATMG00180.1	18644794
ATMG00960.1	TraesCS3D01G197300.1	ATMG00180.1	18644794
ATMG00960.1	TraesCS4D01G146500.1	ATMG00180.1	18644794
ATMG00960.1	TraesCS4D01G161300.1	ATMG00180.1	18644794
ATMG00960.1	TraesCS5D01G003300.1	ATMG00180.1	18644794
ATMG00960.1	TraesCS6B01G131500.1	ATMG00180.1	18644794
ATMG00960.1	TraesCS6B01G131800.1	ATMG00180.1	18644794
ATMG00960.1	TraesCS6B01G232500.1	ATMG00180.1	18644794
ATMG00960.1	TraesCS6B01G357400.1	ATMG00180.1	18644794
ATMG00960.1	TraesCS6D01G324000.1	ATMG00180.1	18644794
ATMG00960.1	TraesCS7B01G047700.1	ATMG00180.1	18644794
ATMG00960.1	TraesCS7B01G429400.1	ATMG00180.1	18644794
ATMG00960.1	TraesCSU01G050200.1	ATMG00180.1	18644794
ATMG00960.1	TraesCS4B01G146000.1	ATMG00830.1	18644794

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS1B01G451000.1	Wheat	mitochondrion	89.97	94.24
TraesCS7D01G533300.1	Wheat	endoplasmic reticulum, mitochondrion, plasma membrane	89.64	93.9
TraesCS2A01G239800.1	Wheat	mitochondrion	88.35	92.54
TraesCS6D01G200900.1	Wheat	plastid	84.47	91.26
HORVU2Hr1G070240.1	Barley	golgi, mitochondrion, vacuole	12.62	88.64
ATMG00960.1	Thale cress	cytosol, peroxisome, plasma membrane	55.99	85.22
HORVU3Hr1G055030.1	Barley	mitochondrion, peroxisome, plastid, vacuole	22.98	81.61
AT2G07768.1	Thale cress	mitochondrion	34.95	70.13
CDY69820	Canola	mitochondrion	23.62	59.84
CDY17575	Canola	mitochondrion	21.36	52.38
CDY17565	Canola	mitochondrion	25.24	49.37
TraesCS7D01G238600.1	Wheat	plasma membrane	89.64	48.26
BAC19893	Rice	endoplasmic reticulum	90.61	47.14
GRMZM5G867512_P01	Maize	mitochondrion	91.59	45.65
GSMUA_AchrUn_...	Banana	plasma membrane	49.84	42.19
CDY45536	Canola	mitochondrion	27.51	40.87
HORVU2Hr1G070250.1	Barley	extracellular, vacuole	8.09	29.76

Protein Annotations

MapMan:2.4.4.2.3.2	InterPro:Cyt_c_assembly	InterPro:Cyt_c_biogenesis	InterPro:Cyt_c_biogenesis_plant	GO:GO:0003674	GO:GO:0005215
GO:GO:0005488	GO:GO:0005575	GO:GO:0006810	GO:GO:0008150	GO:GO:0009987	GO:GO:0015232
GO:GO:0015886	GO:GO:0016020	GO:GO:0016043	GO:GO:0017004	GO:GO:0020037	PFAM:PF01578
PRINTS:PR01410	PRINTS:PR01412	PANTHER:PTHR43653	PANTHER:PTHR43653:SF1	TMHMM:TMhelix	EnsemblPlantsGene:TraesCS6D01G375100
EnsemblPlants:TraesCS6D01G375100.1	SEG:seg	:	:	:	:

Description

No Description!

Coordinates

chr6D:+:458912249..458913242

Molecular Weight (calculated)

34751.7 Da

IEP (calculated)

11.721

GRAVY (calculated)

0.057

Length

309 amino acids

Sequence
(BLAST)

001: MGFGLCRSKM MNGIVALHSP PMRKDAAEKN GTLLRSVGCV GSHIRSSLFT RSLKHFVGGA PALLLRSNRS LLMLLRRRFF AFSSLWTGAL MDTGREQAKR
101: VVRNGKKDTT TSPLCWTAGA NTVVSDQDQE PIRIWILTCR LFLTVGISPG SWWAHHELGR GGWWFRDPVE YASFMPRVLA TARIHSVILP LLHSWTSLLN
201: ILTLPCCVLG TFSIRSGLLA PVHSSSTDDT RGRFLWRFFL LITGISMTLF YQMKQEASVR RTYKKEMVVA RSTLVHLRHS ARAASNWLPD FVPSVALRKS
301: LWRGAAGYF

Best Arabidopsis Sequence Match ( AT2G07768.1 )
(BLAST)

001: MERKRPLLRL FVGPPARTQW SGWLVVSGSR RNASFMPRVL ATARIHSVIL PLLHSWTSFL NIVTFPCCVS GTFSIRSGLL APVHSFATDD TRGIFLWWFF
101: LLMTGISMIL FYQMKQQASV RRTYKKEMVV ARSTLVHLRH SARAQPRPVM LWKN

Arabidopsis Description

Cytochrome C assembly protein [Source:UniProtKB/TrEMBL;Acc:F4IL90]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.