Factsheet for HORVU3Hr1G055030.1

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, peroxisome, plastid, vacuole

Predictor Summary:

plastid 1
mitochondrion 2
peroxisome 1
vacuole 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
HORVU0Hr1G010690.1
HORVU1Hr1G025070.1
HORVU1Hr1G063940.1
HORVU3Hr1G090840.1
HORVU3Hr1G098650.1
HORVU3Hr1G115140.1
HORVU3Hr1G115160.1
HORVU6Hr1G037030.1
HORVU6Hr1G037070.1
HORVU7Hr1G058850.1
HORVU7Hr1G067010.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
ATMG00960.1	HORVU1Hr1G063940.1	AT1G22840.1	18644794
ATMG00960.1	HORVU3Hr1G090840.1	AT1G22840.1	18644794
ATMG00960.1	HORVU3Hr1G098650.1	AT5G40810.1	18644794
ATMG00960.1	HORVU7Hr1G058850.1	AT5G40810.1	18644794
ATMG00960.1	HORVU0Hr1G010690.1	ATMG00180.1	18644794
ATMG00960.1	HORVU1Hr1G025070.1	ATMG00180.1	18644794
ATMG00960.1	HORVU6Hr1G037070.1	ATMG00180.1	18644794
ATMG00960.1	HORVU7Hr1G067010.1	ATMG00180.1	18644794
ATMG00960.1	HORVU3Hr1G115140.1	ATMG00830.1	18644794
ATMG00960.1	HORVU3Hr1G115160.1	ATMG00830.1	18644794
ATMG00960.1	HORVU6Hr1G037030.1	ATMG00830.1	18644794

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
HORVU2Hr1G070240.1	Barley	golgi, mitochondrion, vacuole	45.98	90.91
HORVU4Hr1G044830.1	Barley	mitochondrion, plasma membrane, vacuole	85.06	85.06
HORVU5Hr1G058280.1	Barley	extracellular, golgi, mitochondrion	80.46	80.46
CDY69820	Canola	mitochondrion	80.46	57.38
HORVU6Hr1G037030.1	Barley	cytosol	33.33	49.15
AT2G07768.1	Thale cress	mitochondrion	80.46	45.45
CDY17575	Canola	mitochondrion	50.57	34.92
ATMG00960.1	Thale cress	cytosol, peroxisome, plasma membrane	80.46	34.48
TraesCS7D01G533300.1	Wheat	endoplasmic reticulum, mitochondrion, plasma membrane	95.4	28.14
TraesCS1B01G451000.1	Wheat	mitochondrion	94.25	27.8
TraesCS2A01G239800.1	Wheat	mitochondrion	93.1	27.46
CDY17565	Canola	mitochondrion	47.13	25.95
TraesCS6D01G375100.1	Wheat	mitochondrion	81.61	22.98
CDY45536	Canola	mitochondrion	50.57	21.15
GSMUA_AchrUn_...	Banana	plasma membrane	74.71	17.81
TraesCS7D01G238600.1	Wheat	plasma membrane	94.25	14.29
BAV58158	Barley	plasma membrane	94.25	13.92
HORVU2Hr1G086550.1	Barley	plasma membrane	91.95	13.58
HORVU6Hr1G024690.1	Barley	endoplasmic reticulum, extracellular, vacuole	0.0	0.0
HORVU5Hr1G112980.1	Barley	endoplasmic reticulum, plasma membrane, vacuole	0.0	0.0
HORVU7Hr1G086940.1	Barley	endoplasmic reticulum, plasma membrane, vacuole	0.0	0.0
HORVU4Hr1G044820.1	Barley	plastid	0.0	0.0
HORVU4Hr1G044810.1	Barley	vacuole	0.0	0.0
HORVU3Hr1G115160.1	Barley	endoplasmic reticulum	0.0	0.0
HORVU3Hr1G115140.1	Barley	plasma membrane, plastid, vacuole	0.0	0.0
HORVU2Hr1G070250.1	Barley	extracellular, vacuole	0.0	0.0

Protein Annotations

EnsemblPlants:HORVU3Hr1G055030.1	EnsemblPlantsGene:HORVU3Hr1G055030	GO:GO:0003674	GO:GO:0005215	GO:GO:0005575	GO:GO:0006810
GO:GO:0008150	GO:GO:0009987	GO:GO:0015232	GO:GO:0015886	GO:GO:0016020	GO:GO:0016043
GO:GO:0017004	InterPro:Cyt_c_biogenesis	PANTHER:PTHR43653	PANTHER:PTHR43653:SF1	PRINTS:PR01410	UniParc:UPI000B464B7E
UniProt:A0A287L3W6	MapMan:2.4.4.2.3.2	:	:	:	:

Description

No Description!

Coordinates

chrchr3H:-:409836031..409836294

Molecular Weight (calculated)

10139.6 Da

IEP (calculated)

11.913

GRAVY (calculated)

-0.029

Length

87 amino acids

Sequence
(BLAST)

1: LGTFSIRSGL LAPVHSSATD DTRGRFLWRF FLLITRISMT LFYQMKQEAS VRRTYKKEMV VVRSTLVHLH HSPRAQPRAV MLCYGRI

Best Arabidopsis Sequence Match ( ATMG00960.1 )
(BLAST)

001: VDTGREQAKR VVRNGKKETT TSPLCWTAGA NTVVSDQDQE PIRIWILTCW WFLTVGILPG SWWAYHELGR GGWWFRDPVE NASFMPRVLA TARIHSVILP
101: LLHSWTSFLN IVTFPCCVSG TFSIRSGLLA PVHSFATDDT RGIFLWWFFL LMTGISMILF YQMKQQASVR RTYKKEMVVA RSTLVHLRHS ARAQPRPVML
201: WKN

Arabidopsis Description

CCB203Cytochrome C assembly protein [Source:TAIR;Acc:ATMG00960]
SUBAcon: [peroxisome,cytosol,plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.