Factsheet for HORVU6Hr1G037070.1

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane, extracellular, vacuole

Predictor Summary:

plastid 1
extracellular 4
endoplasmic reticulum 3
vacuole 4
plasma membrane 4
golgi 3

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular, plasma membrane, vacuole
Any Predictor:	plastid, secretory
ChloroP:	plastid
iPSORT:	secretory
MultiLoc:	extracellular
Predotar:	secretory
TargetP:	secretory
WoLF PSORT:	vacuole
YLoc:	plasma membrane

PPI

Inferred distinct locusB in Crop

locusB	locations
BAV58158
HORVU2Hr1G070240.1
HORVU2Hr1G070250.1
HORVU2Hr1G086550.1
HORVU3Hr1G055030.1
HORVU5Hr1G058280.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
ATMG00180.1	BAV58158	ATMG00960.1	18644794
ATMG00180.1	HORVU2Hr1G070240.1	ATMG00960.1	18644794
ATMG00180.1	HORVU2Hr1G070250.1	ATMG00960.1	18644794
ATMG00180.1	HORVU2Hr1G086550.1	ATMG00960.1	18644794
ATMG00180.1	HORVU3Hr1G055030.1	ATMG00960.1	18644794
ATMG00180.1	HORVU5Hr1G058280.1	ATMG00960.1	18644794

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
HORVU7Hr1G067010.1	Barley	extracellular, plasma membrane, vacuole	94.18	93.84
TraesCS1B01G475500.1	Wheat	extracellular, plasma membrane, vacuole	93.82	93.82
TraesCS1B01G352800.1	Wheat	extracellular	93.45	93.45
TraesCS2A01G330700.1	Wheat	extracellular	92.73	93.07
TraesCS3D01G197300.1	Wheat	extracellular	92.73	92.73
TraesCS3A01G218900.3	Wheat	extracellular	90.91	91.58
TraesCS3D01G103300.1	Wheat	endoplasmic reticulum, vacuole	92.36	86.39
HORVU0Hr1G010690.1	Barley	endoplasmic reticulum, extracellular, vacuole	68.36	86.24
HORVU1Hr1G025070.1	Barley	extracellular	68.0	85.39
VIT_03s0063g02270.t01	Wine grape	extracellular	15.27	60.87
BAC19894	Rice	endoplasmic reticulum, plasma membrane	86.55	54.59
Solyc11g039360.1.1	Tomato	vacuole	57.45	45.93
PGSC0003DMT400087800	Potato	cytosol, mitochondrion, plastid, vacuole	66.91	45.77
ATMG00180.1	Thale cress	plasma membrane	70.91	43.14
GSMUA_AchrUn_...	Banana	endoplasmic reticulum, extracellular, vacuole	40.36	33.33
CDY45515	Canola	mitochondrion	24.0	32.35
CDY17587	Canola	mitochondrion	24.0	32.35
AT2G07815.1	Thale cress	mitochondrion	24.0	23.66

Protein Annotations

EnsemblPlants:HORVU6Hr1G037070.1	EnsemblPlantsGene:HORVU6Hr1G037070	GO:GO:0005575	GO:GO:0016020	GO:GO:0016021	PANTHER:PTHR36010
SEG:seg	TMHMM:TMhelix	UniParc:UPI000B46E882	UniProt:A0A287TXW1	MapMan:35.1	:

Description

No Description!

Coordinates

chrchr6H:-:185140527..185141497

Molecular Weight (calculated)

30615.0 Da

IEP (calculated)

10.620

GRAVY (calculated)

0.147

Length

275 amino acids

Sequence
(BLAST)

001: MVQLQNFLFF ITSMVVPRGT AAPVLLKWFV SRDVPTGASS SNGTIIPIPI PLFPFLVYLH LRKFIRSMDR AKSGVLVKAS RPILLPDKME RTSSARNALF
101: RFVPVLHFLI IESMGDLSYL EFFCGLLCLQ FFRTLFSLPR DRSAKRERAL RSKGQTLWPK GNEQKNDKMR CPTHPHIERR VEGFGFPPPP APRSSSGACL
201: GGVPPESGLE ALTLLTSRLL MAVGHDYYKK VKMNLSISHG GVCIFMLGVL LSCDPMAYVR LVAHASYSIC SGRAA

Best Arabidopsis Sequence Match ( ATMG00180.1 )
(BLAST)

001: MVQLHNFFFF IIFMVVPCGT AAPVLLKWFV SRDVPTGAPF SNGTIIPIPI SSFPLLVYLH SRKIIRSMDG AKSGVLVRAS RPILLPDIIG RSSSETRARK
101: ALFFFVPVLH FRLLESKGDF SYLESFCGVL CLLFFRTFLF LARDRSAKRE RARRRKGQTL RPNGNEQRRN DKMRCSGHPH LDLERRVEGF GPLAFPVPPE
201: LGGACVGGVP PEIGLEALAL PRSRQLMAMA VGHDYYQKVP MKMNISHGGV CICMLGVLLS NTKKIQFTQR LPLGYELHMG KERCCLRGLD HLHGPTFHSI
301: CGNLMIYKPS LTNDRLMFEH DESLHADLLL INFPASYKNG KLEHFLHWWM KNRKHNNFWL TMFPEKRYFR ERTSTAEVAI HTNLFTDLYA SIGTGSSRTG
401: GWYTTIMKLP FIFFIRIGFM LASLGGSPSL LRQLQKDKLR WNRESSVEFI IA

Arabidopsis Description

CCB452CcmFC [Source:UniProtKB/TrEMBL;Acc:G1C2X7]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.