Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion, golgi, extracellular
Predictor Summary:
Predictor Summary:
- mitochondrion 2
- golgi 1
- extracellular 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| HORVU2Hr1G070240.1 | Barley | golgi, mitochondrion, vacuole | 44.83 | 88.64 |
| HORVU3Hr1G055030.1 | Barley | mitochondrion, peroxisome, plastid, vacuole | 80.46 | 80.46 |
| HORVU4Hr1G044830.1 | Barley | mitochondrion, plasma membrane, vacuole | 75.86 | 75.86 |
| CDY69820 | Canola | mitochondrion | 81.61 | 58.2 |
| HORVU6Hr1G037030.1 | Barley | cytosol | 32.18 | 47.46 |
| AT2G07768.1 | Thale cress | mitochondrion | 81.61 | 46.1 |
| CDY17575 | Canola | mitochondrion | 51.72 | 35.71 |
| ATMG00960.1 | Thale cress | cytosol, peroxisome, plasma membrane | 81.61 | 34.98 |
| CDY17565 | Canola | mitochondrion | 48.28 | 26.58 |
| TraesCS6D01G200900.1 | Wheat | plastid | 83.91 | 25.52 |
| CDY45536 | Canola | mitochondrion | 51.72 | 21.63 |
| GSMUA_AchrUn_... | Banana | plasma membrane | 74.71 | 17.81 |
| HORVU2Hr1G086550.1 | Barley | plasma membrane | 85.06 | 12.56 |
| BAV58158 | Barley | plasma membrane | 85.06 | 12.56 |
| HORVU2Hr1G070250.1 | Barley | extracellular, vacuole | 0.0 | 0.0 |
| HORVU3Hr1G115140.1 | Barley | plasma membrane, plastid, vacuole | 0.0 | 0.0 |
| HORVU3Hr1G115160.1 | Barley | endoplasmic reticulum | 0.0 | 0.0 |
| HORVU4Hr1G044810.1 | Barley | vacuole | 0.0 | 0.0 |
| HORVU4Hr1G044820.1 | Barley | plastid | 0.0 | 0.0 |
| HORVU5Hr1G112980.1 | Barley | endoplasmic reticulum, plasma membrane, vacuole | 0.0 | 0.0 |
| HORVU6Hr1G024690.1 | Barley | endoplasmic reticulum, extracellular, vacuole | 0.0 | 0.0 |
| HORVU7Hr1G086940.1 | Barley | endoplasmic reticulum, plasma membrane, vacuole | 0.0 | 0.0 |
Protein Annotations
| EnsemblPlants:HORVU5Hr1G058280.1 | EnsemblPlantsGene:HORVU5Hr1G058280 | GO:GO:0003674 | GO:GO:0005215 | GO:GO:0005575 | GO:GO:0006810 |
| GO:GO:0008150 | GO:GO:0009987 | GO:GO:0015232 | GO:GO:0015886 | GO:GO:0016020 | GO:GO:0016021 |
| GO:GO:0016043 | GO:GO:0017004 | InterPro:Cyt_c_biogenesis | PANTHER:PTHR43653 | PANTHER:PTHR43653:SF1 | PRINTS:PR01410 |
| TMHMM:TMhelix | UniParc:UPI000B474EC6 | UniProt:A0A287RCX1 | MapMan:2.4.4.2.3.2 | : | : |
Description
No Description!
Coordinates
chrchr5H:-:455848080..455848341
Molecular Weight (calculated)
10067.5 Da
IEP (calculated)
11.185
GRAVY (calculated)
0.078
Length
87 amino acids
Sequence
(BLAST)
(BLAST)
1: LGTFSIRSGL LAPVHSSATD DTRGRFLWRF FLLITGISMI LFYQMKQEAS VHRTYKKEMV VAPSTLMHLC HLARAQPRPV NFMLWKN
001: VDTGREQAKR VVRNGKKETT TSPLCWTAGA NTVVSDQDQE PIRIWILTCW WFLTVGILPG SWWAYHELGR GGWWFRDPVE NASFMPRVLA TARIHSVILP
101: LLHSWTSFLN IVTFPCCVSG TFSIRSGLLA PVHSFATDDT RGIFLWWFFL LMTGISMILF YQMKQQASVR RTYKKEMVVA RSTLVHLRHS ARAQPRPVML
201: WKN
101: LLHSWTSFLN IVTFPCCVSG TFSIRSGLLA PVHSFATDDT RGIFLWWFFL LMTGISMILF YQMKQQASVR RTYKKEMVVA RSTLVHLRHS ARAQPRPVML
201: WKN
Arabidopsis Description
CCB203Cytochrome C assembly protein [Source:TAIR;Acc:ATMG00960]
SUBAcon: [peroxisome,cytosol,plasma membrane]
SUBAcon: [peroxisome,cytosol,plasma membrane]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.