Subcellular Localization
min:
: max
Winner_takes_all: cytosol, peroxisome, plastid
Predictor Summary:
Predictor Summary:
- cytosol 1
- plastid 1
- peroxisome 1
| Predictors | GFP | MS/MS | Papers | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra025544.1-P | Field mustard | cytosol | 37.69 | 91.46 |
| Solyc02g093900.2.1 | Tomato | nucleus, plastid | 91.96 | 68.03 |
| TraesCS3D01G451000.1 | Wheat | mitochondrion | 99.5 | 64.5 |
| Os01t0935700-02 | Rice | mitochondrion | 98.49 | 64.47 |
| HORVU7Hr1G058850.1 | Barley | mitochondrion | 94.47 | 61.84 |
| TraesCS3A01G458200.1 | Wheat | cytosol, endoplasmic reticulum, mitochondrion | 99.0 | 61.37 |
| Bra032991.1-P | Field mustard | mitochondrion | 94.47 | 61.24 |
| Bra039089.1-P | Field mustard | mitochondrion | 94.47 | 61.24 |
| CDY13693 | Canola | mitochondrion | 94.47 | 61.24 |
| CDY28482 | Canola | mitochondrion | 94.47 | 61.24 |
| CDY34168 | Canola | mitochondrion | 94.47 | 61.24 |
| KRG94438 | Soybean | mitochondrion | 94.47 | 61.24 |
| GSMUA_Achr1P18150_001 | Banana | mitochondrion | 93.97 | 60.91 |
| GSMUA_Achr1P09720_001 | Banana | mitochondrion | 92.96 | 60.66 |
| AT5G40810.1 | Thale cress | mitochondrion | 93.47 | 60.59 |
| KRH07017 | Soybean | mitochondrion | 93.47 | 60.59 |
| KRG94326 | Soybean | mitochondrion | 92.96 | 60.26 |
| AT3G27240.1 | Thale cress | mitochondrion | 92.46 | 59.93 |
| GSMUA_Achr7P05470_001 | Banana | mitochondrion | 92.96 | 59.87 |
| KRH57638 | Soybean | mitochondrion | 92.46 | 59.74 |
| VIT_14s0171g00330.t01 | Wine grape | mitochondrion | 92.96 | 59.68 |
| PGSC0003DMT400052104 | Potato | mitochondrion | 91.96 | 59.03 |
| PGSC0003DMT400073387 | Potato | mitochondrion | 94.47 | 58.75 |
| Solyc06g067920.2.1 | Tomato | endoplasmic reticulum, nucleus, unclear | 93.97 | 58.44 |
| VIT_09s0002g05950.t01 | Wine grape | endoplasmic reticulum, golgi | 92.46 | 58.23 |
| PGSC0003DMT400073726 | Potato | mitochondrion | 93.97 | 57.72 |
| Solyc12g042920.1.1 | Tomato | nucleus | 93.97 | 57.72 |
| CDY36384 | Canola | plastid | 53.27 | 51.96 |
| CDY20058 | Canola | plastid | 94.47 | 51.65 |
| Bra025260.1-P | Field mustard | mitochondrion | 78.89 | 51.64 |
| CDX83670 | Canola | mitochondrion | 93.97 | 50.27 |
| CDY00164 | Canola | endoplasmic reticulum | 93.97 | 49.34 |
Protein Annotations
| Gene3D:1.10.760.10 | Gene3D:1.20.5.100 | MapMan:2.4.3.2 | UniProt:A0A287MGM0 | InterPro:Cyt_c-like_dom_sf | InterPro:Cyt_c1 |
| InterPro:Cyt_c1_TM_anchor_C | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0005488 | GO:GO:0006091 | GO:GO:0008150 |
| GO:GO:0008152 | GO:GO:0009055 | GO:GO:0009987 | GO:GO:0020037 | GO:GO:0022900 | EnsemblPlantsGene:HORVU3Hr1G098650 |
| EnsemblPlants:HORVU3Hr1G098650.1 | InterPro:IPR036909 | PFAM:PF02167 | PRINTS:PR00603 | PANTHER:PTHR10266 | PANTHER:PTHR10266:SF6 |
| SUPFAM:SSF46626 | SUPFAM:SSF81496 | UniParc:UPI000B47AB8C | SEG:seg | : | : |
Description
No Description!
Coordinates
chrchr3H:-:659525569..659527698
Molecular Weight (calculated)
22183.5 Da
IEP (calculated)
4.915
GRAVY (calculated)
-0.306
Length
199 amino acids
Sequence
(BLAST)
(BLAST)
001: MSLISYRDLV GVAYTEEETK AMAAEIEVVD GPNDEGEMFT RPGKLSDRLP QPYANEQAAR FSNGGAYPPD LSLITKARHN GQNYVFSLLT GYRDPPAGVS
101: IREGLHYNPY FPGGAIAMPK MLSDGAVEYE DGTPATEAQM GKDVVSFLSW AAEPEMEERK LMGVKWIFLL SLALLQAAYY RRMKWSVYKS RKLVLDVVN
101: IREGLHYNPY FPGGAIAMPK MLSDGAVEYE DGTPATEAQM GKDVVSFLSW AAEPEMEERK LMGVKWIFLL SLALLQAAYY RRMKWSVYKS RKLVLDVVN
001: MVGGGVIQQI LRRKLHSQSL ATPVLSWFSS KKAHEDAGSS GVRALALLGA GVTGLLSFST VASADEAEHG LESPEYPWPH DGILSSYDHA SIRRGHQVYQ
101: QVCASCHSMS LISYRDLVGV AYTEEEAKAM AAEIEVVDGP NDEGEMFTRP GKLSDRFPQP YANESAARFA NGGAYPPDLS LITKARHNGP NYVFALLTGY
201: RDPPAGISIR EGLHYNPYFP GGAIAMPKML NDEAVEYEDG VPATEAQMGK DIVSFLAWAA EPEMEERKLM GFKWIFLLSL ALLQAAYYRR LKWSVLKSRK
301: LVLDVVN
101: QVCASCHSMS LISYRDLVGV AYTEEEAKAM AAEIEVVDGP NDEGEMFTRP GKLSDRFPQP YANESAARFA NGGAYPPDLS LITKARHNGP NYVFALLTGY
201: RDPPAGISIR EGLHYNPYFP GGAIAMPKML NDEAVEYEDG VPATEAQMGK DIVSFLAWAA EPEMEERKLM GFKWIFLLSL ALLQAAYYRR LKWSVLKSRK
301: LVLDVVN
Arabidopsis Description
CYC11Cytochrome c1 1, heme protein, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q9LK29]
SUBAcon: [mitochondrion]
SUBAcon: [mitochondrion]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.