Factsheet for GSMUA_Achr1P18150_001

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 1
mitochondrion 9

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_AchrUn_...	Banana	endoplasmic reticulum, extracellular, mitochondrion, plastid	12.05	97.37
HORVU3Hr1G098650.1	Barley	cytosol, peroxisome, plastid	60.91	93.97
GSMUA_Achr7P05470_001	Banana	mitochondrion	90.55	89.97
GSMUA_Achr1P09720_001	Banana	mitochondrion	85.99	86.56
Os01t0935700-02	Rice	mitochondrion	83.71	84.54
Os05t0301700-01	Rice	mitochondrion	83.39	84.21
TraesCS7D01G277900.1	Wheat	mitochondrion	82.74	83.55
TraesCS7A01G278100.1	Wheat	golgi, unclear	82.74	83.55
HORVU7Hr1G058850.1	Barley	mitochondrion	82.41	83.22
TraesCS7B01G175500.1	Wheat	mitochondrion	82.08	82.89
KXG25408	Sorghum	mitochondrion	82.08	82.89
TraesCS3D01G451000.1	Wheat	mitochondrion	82.08	82.08
Zm00001d049959_P001	Maize	mitochondrion	81.76	81.76
TraesCS3A01G458200.1	Wheat	cytosol, endoplasmic reticulum, mitochondrion	81.76	78.19
GSMUA_AchrUn_...	Banana	endoplasmic reticulum, extracellular, vacuole	29.97	67.65
Zm00001d031967_P001	Maize	cytosol, endoplasmic reticulum, peroxisome	78.83	66.12
GSMUA_AchrUn_...	Banana	cytosol, mitochondrion	21.82	59.29
GSMUA_Achr5P17710_001	Banana	cytosol	41.04	51.43

Protein Annotations

Gene3D:1.10.760.10	Gene3D:1.20.5.100	MapMan:2.4.3.2	InterPro:Cyt_c-like_dom	InterPro:Cyt_c-like_dom_sf	InterPro:Cyt_c1
InterPro:Cyt_c1_TM_anchor_C	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488	GO:GO:0006091	GO:GO:0008150
GO:GO:0008152	GO:GO:0009055	GO:GO:0009987	GO:GO:0020037	GO:GO:0022900	GO:GO:0046872
EnsemblPlantsGene:GSMUA_Achr1G18150_001	EnsemblPlants:GSMUA_Achr1P18150_001	EnsemblPlants:GSMUA_Achr1T18150_001	InterPro:IPR009056	InterPro:IPR036909	UniProt:M0S0X3
PFAM:PF02167	PRINTS:PR00603	PFscan:PS51007	PANTHER:PTHR10266	PANTHER:PTHR10266:SF6	SUPFAM:SSF46626
SUPFAM:SSF81496	UniParc:UPI0002955B6F	SEG:seg	:	:	:

Description

Cytochrome c1-1, heme protein, mitochondrial [Source:GMGC_GENE;Acc:GSMUA_Achr1G18150_001]

Coordinates

chr1:+:13579803..13585621

Molecular Weight (calculated)

33757.4 Da

IEP (calculated)

6.889

GRAVY (calculated)

-0.175

Length

307 amino acids

Sequence
(BLAST)

001: MAAGRGISQL LRKRFQFQSS VPSFVQYIKQ EEATGSAGMK SPKVLALLGV GITGALGFAS LASADEAEHG LAAPIYPWPH KGILDSYDHA SIRRGHQVFQ
101: QVCASCHSMS LISYRDLVGV AYTEEETKAM AAEIEVVDGP NDEGEMFTRP GKLSDRFQQP YPNEQAARFA NGGAYPPDLS LITKARHNGQ NYVFALLTGY
201: RDPPAGVSIR EGLHYNPYFP GGAIAMPKML IDGAVEYEDG TPATEAQMGK DVVTFLSWAA EPEMEERKLM GFKWIFVLSL ALLQAAYYRR LKWSVIKSRK
301: LVVDVVN

Best Arabidopsis Sequence Match ( AT5G40810.1 )
(BLAST)

001: MVGGGVIRQL LRRKLHSQSV ATPVLSWLSS KKANEDAGSA GLRAFALMGA GITGLLSFST VASADEAEHG LECPNYPWPH EGILSSYDHA SIRRGHQVYQ
101: QVCASCHSMS LISYRDLVGV AYTEEEAKAM AAEIEVVDGP NDEGEMFTRP GKLSDRLPEP YSNESAARFA NGGAYPPDLS LVTKARHNGQ NYVFALLTGY
201: RDPPAGISIR EGLHYNPYFP GGAIAMPKML NDEAVEYEDG TPATEAQMGK DVVSFLSWAA EPEMEERKLM GFKWIFLLSL ALLQAAYYRR LKWSVLKSRK
301: LVLDVVN

Arabidopsis Description

CYC12Cytochrome c1 2, heme protein, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q9FKS5]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.