Factsheet for TraesCS3D01G451000.1

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

mitochondrion 6
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	mitochondrion
Any Predictor:	mitochondrion, plastid
iPSORT:	mitochondrion
MultiLoc:	mitochondrion
Predotar:	mitochondrion
PProwler:	mitochondrion
TargetP:	mitochondrion
WoLF PSORT:	plastid
YLoc:	mitochondrion

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS1B01G451000.1
TraesCS2A01G239800.1
TraesCS6D01G200900.1
TraesCS6D01G375100.1
TraesCS7D01G238600.1
TraesCS7D01G533300.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G40810.1	TraesCS1B01G451000.1	ATMG00960.1	18644794
AT5G40810.1	TraesCS2A01G239800.1	ATMG00960.1	18644794
AT5G40810.1	TraesCS6D01G200900.1	ATMG00960.1	18644794
AT5G40810.1	TraesCS6D01G375100.1	ATMG00960.1	18644794
AT5G40810.1	TraesCS7D01G238600.1	ATMG00960.1	18644794
AT5G40810.1	TraesCS7D01G533300.1	ATMG00960.1	18644794

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
HORVU3Hr1G098650.1	Barley	cytosol, peroxisome, plastid	64.5	99.5
TraesCS3A01G458200.1	Wheat	cytosol, endoplasmic reticulum, mitochondrion	96.42	92.21
Os01t0935700-02	Rice	mitochondrion	89.9	90.79
Bra025544.1-P	Field mustard	cytosol	24.1	90.24
Solyc02g093900.2.1	Tomato	nucleus, plastid	77.2	88.1
TraesCS7D01G277900.1	Wheat	mitochondrion	86.64	87.5
GSMUA_Achr1P09720_001	Banana	mitochondrion	82.08	82.62
VIT_14s0171g00330.t01	Wine grape	mitochondrion	83.39	82.58
GSMUA_Achr7P05470_001	Banana	mitochondrion	82.74	82.2
AT5G40810.1	Thale cress	mitochondrion	82.08	82.08
GSMUA_Achr1P18150_001	Banana	mitochondrion	82.08	82.08
CDY34168	Canola	mitochondrion	81.76	81.76
Bra032991.1-P	Field mustard	mitochondrion	81.76	81.76
CDY13693	Canola	mitochondrion	81.43	81.43
Bra039089.1-P	Field mustard	mitochondrion	81.43	81.43
AT3G27240.1	Thale cress	mitochondrion	81.11	81.11
CDY28482	Canola	mitochondrion	81.11	81.11
KRG94326	Soybean	mitochondrion	80.78	80.78
KRG94438	Soybean	mitochondrion	80.78	80.78
KRH07017	Soybean	mitochondrion	80.46	80.46
PGSC0003DMT400052104	Potato	mitochondrion	80.46	79.68
KRH57638	Soybean	mitochondrion	79.48	79.22
PGSC0003DMT400073387	Potato	mitochondrion	81.43	78.12
VIT_09s0002g05950.t01	Wine grape	endoplasmic reticulum, golgi	80.13	77.85
Solyc06g067920.2.1	Tomato	endoplasmic reticulum, nucleus, unclear	80.78	77.5
PGSC0003DMT400073726	Potato	mitochondrion	80.46	76.23
Solyc12g042920.1.1	Tomato	nucleus	80.46	76.23
Bra025260.1-P	Field mustard	mitochondrion	71.66	72.37
CDY20058	Canola	plastid	81.43	68.68
CDX83670	Canola	mitochondrion	80.78	66.67
CDY00164	Canola	endoplasmic reticulum	81.43	65.96
CDY36384	Canola	plastid	38.11	57.35

Protein Annotations

EnsemblPlants:TraesCS3D01G451000.1	EnsemblPlantsGene:TraesCS3D01G451000	Gene3D:1.10.760.10	Gene3D:1.20.5.100	GO:GO:0003674	GO:GO:0003824
GO:GO:0005488	GO:GO:0009055	GO:GO:0020037	InterPro:Cyt_c-like_dom	InterPro:Cyt_c-like_dom_sf	InterPro:Cyt_c1
InterPro:Cyt_c1_TM_anchor_C	InterPro:IPR009056	InterPro:IPR036909	PANTHER:PTHR10266	PANTHER:PTHR10266:SF6	PFAM:PF02167
PFscan:PS51007	PRINTS:PR00603	SUPFAM:SSF46626	SUPFAM:SSF81496	MapMan:2.4.3.2	:

Description

No Description!

Coordinates

chr3D:+:559115081..559118797

Molecular Weight (calculated)

33621.1 Da

IEP (calculated)

6.606

GRAVY (calculated)

-0.241

Length

307 amino acids

Sequence
(BLAST)

001: MATGRGISQL LKKVFRQHPS GSSLLSSTRI YHGEGITGFT GLKALAILGV GASGLLSFGT IASADEAEHG LESPSYPWPH EGILSSYDHA SIRRGHQVYQ
101: QVCASCHSMS LISYRDLVGV AYTEEETKAM AAEIEVVDGP NDEGEMFTRP GKLSDRLPQP YANEQAARFS NGGAYPPDLS LITKARHNGQ NYVFSLLTGY
201: RDPPAGVSIR EGLHYNPYFP GGAIAMPKML SDGAVEYEDG TPATEAQMGK DVVSFLSWAA EPEMEERKLM GVKWIFLLSL ALMQAAYYRR MKWSVYKSRK
301: LVLDVVN

Best Arabidopsis Sequence Match ( AT5G40810.1 )
(BLAST)

001: MVGGGVIRQL LRRKLHSQSV ATPVLSWLSS KKANEDAGSA GLRAFALMGA GITGLLSFST VASADEAEHG LECPNYPWPH EGILSSYDHA SIRRGHQVYQ
101: QVCASCHSMS LISYRDLVGV AYTEEEAKAM AAEIEVVDGP NDEGEMFTRP GKLSDRLPEP YSNESAARFA NGGAYPPDLS LVTKARHNGQ NYVFALLTGY
201: RDPPAGISIR EGLHYNPYFP GGAIAMPKML NDEAVEYEDG TPATEAQMGK DVVSFLSWAA EPEMEERKLM GFKWIFLLSL ALLQAAYYRR LKWSVLKSRK
301: LVLDVVN

Arabidopsis Description

CYC12Cytochrome c1 2, heme protein, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q9FKS5]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.