CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 4
mitochondrion 4
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra025544.1-P	Field mustard	cytosol	36.27	90.24
GSMUA_AchrUn_...	Banana	endoplasmic reticulum, extracellular, mitochondrion, plastid	14.71	78.95
HORVU3Hr1G098650.1	Barley	cytosol, peroxisome, plastid	51.96	53.27
Solyc02g093900.2.1	Tomato	nucleus, plastid	56.37	42.75
AT5G40810.1	Thale cress	mitochondrion	60.78	40.39
CDY13693	Canola	mitochondrion	60.78	40.39
CDY28482	Canola	mitochondrion	60.78	40.39
CDY34168	Canola	mitochondrion	60.78	40.39
KXG25408	Sorghum	mitochondrion	58.82	39.47
Os05t0301700-01	Rice	mitochondrion	58.33	39.14
Os01t0935700-02	Rice	mitochondrion	58.33	39.14
Zm00001d049959_P001	Maize	mitochondrion	58.33	38.76
KRG94438	Soybean	mitochondrion	58.33	38.76
TraesCS7D01G277900.1	Wheat	mitochondrion	57.35	38.49
TraesCS7A01G278100.1	Wheat	golgi, unclear	57.35	38.49
KRH07017	Soybean	mitochondrion	57.84	38.44
HORVU7Hr1G058850.1	Barley	mitochondrion	56.86	38.16
TraesCS7B01G175500.1	Wheat	mitochondrion	56.86	38.16
TraesCS3D01G451000.1	Wheat	mitochondrion	57.35	38.11
PGSC0003DMT400052104	Potato	mitochondrion	57.35	37.74
KRH57638	Soybean	mitochondrion	56.86	37.66
KRG94326	Soybean	mitochondrion	56.37	37.46
VIT_14s0171g00330.t01	Wine grape	mitochondrion	56.37	37.1
TraesCS3A01G458200.1	Wheat	cytosol, endoplasmic reticulum, mitochondrion	57.84	36.76
CDY20058	Canola	plastid	60.78	34.07
CDX83670	Canola	mitochondrion	60.78	33.33
CDY00164	Canola	endoplasmic reticulum	60.78	32.72
Zm00001d031967_P001	Maize	cytosol, endoplasmic reticulum, peroxisome	57.35	31.97
GSMUA_Achr5P17710_001	Banana	cytosol	34.31	28.57
GSMUA_AchrUn_...	Banana	cytosol, mitochondrion	12.75	23.01
GSMUA_AchrUn_...	Banana	endoplasmic reticulum, extracellular, vacuole	4.9	7.35

Protein Annotations

Gene3D:1.10.760.10	MapMan:2.4.3.2	GO:A0A078HG41	UniProt:A0A078HG41	EnsemblPlants:CDY36384	ProteinID:CDY36384
ProteinID:CDY36384.1	InterPro:Cyt_c-like_dom_sf	InterPro:Cyt_c1	InterPro:Cyt_c1_TM_anchor_C	GO:GO:0003674	GO:GO:0003824
GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005739
GO:GO:0005750	GO:GO:0005773	GO:GO:0006091	GO:GO:0008150	GO:GO:0008152	GO:GO:0009055
GO:GO:0009987	GO:GO:0016020	GO:GO:0020037	GO:GO:0022900	EnsemblPlantsGene:GSBRNA2T00060438001	InterPro:IPR036909
PFAM:PF02167	PRINTS:PR00603	PANTHER:PTHR10266	PANTHER:PTHR10266:SF6	SUPFAM:SSF46626	SUPFAM:SSF81496
UniParc:UPI0004EEC03E	:	:	:	:	:

Description

BnaC04g32920DBnaC04g32920D protein [Source:UniProtKB/TrEMBL;Acc:A0A078HG41]

Coordinates

chrLK032374:+:305646..307902

Molecular Weight (calculated)

23582.1 Da

IEP (calculated)

10.163

GRAVY (calculated)

0.026

Length

204 amino acids

Sequence
(BLAST)

001: MAFSAPTTML RSVAVTRFIS KSVHLATPCL SSHTVIWWVL PTQRKKPRQW LLRSRLLMDQ VMKVRCSPDL MLFHLNLYAS KRIFALLTGY RDPPAGISIR
101: EGLHYNPYFP GGAIAMPKML NDEAVEYEDG TSATEAQMGK DVVSFLSWAA EPEMEVRKLM GFKWIILLSL FLLQAAYYRE TEMWVRHWKW SVLKSRKLVL
201: DVVN

Best Arabidopsis Sequence Match ( AT3G27240.1 )
(BLAST)

001: MVGGGVIQQI LRRKLHSQSL ATPVLSWFSS KKAHEDAGSS GVRALALLGA GVTGLLSFST VASADEAEHG LESPEYPWPH DGILSSYDHA SIRRGHQVYQ
101: QVCASCHSMS LISYRDLVGV AYTEEEAKAM AAEIEVVDGP NDEGEMFTRP GKLSDRFPQP YANESAARFA NGGAYPPDLS LITKARHNGP NYVFALLTGY
201: RDPPAGISIR EGLHYNPYFP GGAIAMPKML NDEAVEYEDG VPATEAQMGK DIVSFLAWAA EPEMEERKLM GFKWIFLLSL ALLQAAYYRR LKWSVLKSRK
301: LVLDVVN

Arabidopsis Description

CYC11Cytochrome c1 1, heme protein, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q9LK29]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.