Factsheet for GSMUA_AchrUn_randomP23250_001

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, endoplasmic reticulum, plastid, extracellular

Predictor Summary:

plastid 3
mitochondrion 3
extracellular 2
endoplasmic reticulum 2
vacuole 1
plasma membrane 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	endoplasmic reticulum, extracellular, mitochondrion, plastid
Any Predictor:	mitochondrion, plastid, secretory
BaCelLo:	plastid
EpiLoc:	mitochondrion
iPSORT:	plastid
MultiLoc:	extracellular
Plant-mPloc:	mitochondrion
PProwler:	secretory
TargetP:	mitochondrion
WoLF PSORT:	plastid
YLoc:	endoplasmic reticulum

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_AchrUn_...

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G40810.1	GSMUA_AchrUn_...	ATMG00960.1	18644794

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra025544.1-P	Field mustard	cytosol	86.84	40.24
CDY36384	Canola	plastid	78.95	14.71
Solyc02g093900.2.1	Tomato	nucleus, plastid	89.47	12.64
GSMUA_Achr1P18150_001	Banana	mitochondrion	97.37	12.05
GSMUA_Achr7P05470_001	Banana	mitochondrion	97.37	11.97
GSMUA_Achr1P09720_001	Banana	mitochondrion	89.47	11.15
AT5G40810.1	Thale cress	mitochondrion	89.47	11.07
KRH07017	Soybean	mitochondrion	89.47	11.07
KRG94438	Soybean	mitochondrion	89.47	11.07
KRG94326	Soybean	mitochondrion	89.47	11.07
CDY34168	Canola	mitochondrion	89.47	11.07
CDY28482	Canola	mitochondrion	89.47	11.07
CDY13693	Canola	mitochondrion	89.47	11.07
Bra039089.1-P	Field mustard	mitochondrion	89.47	11.07
Bra032991.1-P	Field mustard	mitochondrion	89.47	11.07
AT3G27240.1	Thale cress	mitochondrion	89.47	11.07
KRH57638	Soybean	mitochondrion	89.47	11.04
PGSC0003DMT400052104	Potato	mitochondrion	89.47	10.97
VIT_09s0002g05950.t01	Wine grape	endoplasmic reticulum, golgi	89.47	10.76
Solyc06g067920.2.1	Tomato	endoplasmic reticulum, nucleus, unclear	89.47	10.62
PGSC0003DMT400073387	Potato	mitochondrion	89.47	10.62
Solyc12g042920.1.1	Tomato	nucleus	89.47	10.49
PGSC0003DMT400073726	Potato	mitochondrion	89.47	10.49
VIT_14s0171g00330.t01	Wine grape	mitochondrion	84.21	10.32
GSMUA_Achr5P17710_001	Banana	cytosol	65.79	10.2
CDY20058	Canola	plastid	89.47	9.34
CDX83670	Canola	mitochondrion	89.47	9.14
CDY00164	Canola	endoplasmic reticulum	89.47	8.97
GSMUA_AchrUn_...	Banana	cytosol, mitochondrion	10.53	3.54
Bra025260.1-P	Field mustard	mitochondrion	18.42	2.3
GSMUA_AchrUn_...	Banana	endoplasmic reticulum, extracellular, vacuole	0.0	0.0

Protein Annotations

EnsemblPlants:GSMUA_AchrUn_randomP23250_001	EnsemblPlants:GSMUA_AchrUn_randomT23250_001	EnsemblPlantsGene:GSMUA_AchrUn_randomG23250_001	Gene3D:1.20.5.100	GO:GO:0003674	GO:GO:0003824
GO:GO:0005488	GO:GO:0006091	GO:GO:0008150	GO:GO:0008152	GO:GO:0009055	GO:GO:0009987
GO:GO:0020037	GO:GO:0022900	InterPro:Cyt_c1	InterPro:Cyt_c1_TM_anchor_C	PANTHER:PTHR10266	PANTHER:PTHR10266:SF6
SEG:seg	SUPFAM:SSF81496	UniParc:UPI000296A328	UniProt:M0UBN3	MapMan:35.2	:

Description

Cytochrome c1-2, heme protein, mitochondrial (Fragment) [Source:GMGC_GENE;Acc:GSMUA_AchrUn_randomG23250_001]

Coordinates

chrchrUn_random:-:113676598..113676714

Molecular Weight (calculated)

4512.8 Da

IEP (calculated)

11.259

GRAVY (calculated)

0.608

Length

38 amino acids

Sequence
(BLAST)

1: MGFKWIFVLS LALLQAAYYR RLKWSVIKSR KLVVDVVN

Best Arabidopsis Sequence Match ( AT5G40810.2 )
(BLAST)

001: MGAGITGLLS FSTVASADEA EHGLECPNYP WPHEGILSSY DHASIRRGHQ VYQQVCASCH SMSLISYRDL VGVAYTEEEA KAMAAEIEVV DGPNDEGEMF
101: TRPGKLSDRL PEPYSNESAA RFANGGAYPP DLSLVTKARH NGQNYVFALL TGYRDPPAGI SIREGLHYNP YFPGGAIAMP KMLNDEAVEY EDGTPATEAQ
201: MGKDVVSFLS WAAEPEMEER KLMGFKWIFL LSLALLQAAY YRRLKWSVLK SRKLVLDVVN

Arabidopsis Description

CYC12Cytochrome c1 2, heme protein, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q9FKS5]
SUBAcon: [peroxisome,plastid,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.