CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 3
mitochondrion 7

Predictors

GFP

MS/MS

Papers

nucleus: 21132161
endoplasmic reticulum: 27224218
mitochondrion: 27780359

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

msms PMID: 27780359 doi

G Mustafa, S Komatsu

Graduate School of Life and Environmental Science, University of Tsukuba , Tsukuba 305-8572, Japan., National Institute of Crop Science, National Agriculture and Food Research Organization , Tsukuba 305-8518, Japan.

msms PMID: 27224218 doi

X Wang, S Komatsu

Graduate School of Life and Environmental Sciences, University of Tsukuba , Tsukuba 305-8572, Japan., National Institute of Crop Science, National Agriculture and Food Research Organization , Tsukuba 305-8518, Japan.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH07017	Soybean	mitochondrion	99.02	99.02
HORVU3Hr1G098650.1	Barley	cytosol, peroxisome, plastid	61.24	94.47
Bra025544.1-P	Field mustard	cytosol	25.08	93.9
Solyc02g093900.2.1	Tomato	nucleus, plastid	81.43	92.94
GSMUA_AchrUn_...	Banana	endoplasmic reticulum, extracellular, mitochondrion, plastid	11.07	89.47
KRG94326	Soybean	mitochondrion	87.3	87.3
KRH57638	Soybean	mitochondrion	87.3	87.01
CDY28482	Canola	mitochondrion	85.34	85.34
CDY13693	Canola	mitochondrion	84.69	84.69
Bra039089.1-P	Field mustard	mitochondrion	84.69	84.69
Bra032991.1-P	Field mustard	mitochondrion	84.69	84.69
CDY34168	Canola	mitochondrion	84.36	84.36
Os05t0301700-01	Rice	mitochondrion	83.39	84.21
AT3G27240.1	Thale cress	mitochondrion	84.04	84.04
KXG25408	Sorghum	mitochondrion	83.06	83.88
Os01t0935700-02	Rice	mitochondrion	83.06	83.88
AT5G40810.1	Thale cress	mitochondrion	83.71	83.71
PGSC0003DMT400052104	Potato	mitochondrion	84.04	83.23
Zm00001d049959_P001	Maize	mitochondrion	83.06	83.06
VIT_14s0171g00330.t01	Wine grape	mitochondrion	83.06	82.26
TraesCS7D01G277900.1	Wheat	mitochondrion	81.43	82.24
TraesCS7A01G278100.1	Wheat	golgi, unclear	81.43	82.24
TraesCS7B01G175500.1	Wheat	mitochondrion	81.11	81.91
HORVU7Hr1G058850.1	Barley	mitochondrion	80.46	81.25
TraesCS3D01G451000.1	Wheat	mitochondrion	80.78	80.78
TraesCS3A01G458200.1	Wheat	cytosol, endoplasmic reticulum, mitochondrion	80.78	77.26
Bra025260.1-P	Field mustard	mitochondrion	75.24	75.99
CDY20058	Canola	plastid	84.69	71.43
CDX83670	Canola	mitochondrion	84.36	69.62
CDY00164	Canola	endoplasmic reticulum	84.36	68.34
Zm00001d031967_P001	Maize	cytosol, endoplasmic reticulum, peroxisome	81.43	68.31
GSMUA_AchrUn_...	Banana	endoplasmic reticulum, extracellular, vacuole	29.64	66.91
GSMUA_AchrUn_...	Banana	cytosol, mitochondrion	21.82	59.29
CDY36384	Canola	plastid	38.76	58.33
GSMUA_Achr5P17710_001	Banana	cytosol	41.04	51.43

Protein Annotations

Gene3D:1.10.760.10	Gene3D:1.20.5.100	EntrezGene:100777056	MapMan:2.4.3.2	EMBL:ACUP02011960	EMBL:BT097545
UniProt:C6TIQ7	InterPro:Cyt_c-like_dom	InterPro:Cyt_c-like_dom_sf	InterPro:Cyt_c1	InterPro:Cyt_c1_TM_anchor_C	EnsemblPlantsGene:GLYMA_19G084900
GO:GO:0003674	GO:GO:0003824	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0005739	GO:GO:0005750	GO:GO:0006091	GO:GO:0006122	GO:GO:0006139
GO:GO:0006810	GO:GO:0008150	GO:GO:0008152	GO:GO:0009055	GO:GO:0009058	GO:GO:0009987
GO:GO:0016020	GO:GO:0020037	GO:GO:0042776	GO:GO:0045153	GO:GO:0045155	GO:GO:0046872
InterPro:IPR009056	InterPro:IPR036909	EnsemblPlants:KRG94438	ProteinID:KRG94438	ProteinID:KRG94438.1	ProteinID:KRG94439.1
PFAM:PF02167	PRINTS:PR00603	PFscan:PS51007	PANTHER:PTHR10266	PANTHER:PTHR10266:SF6	SUPFAM:SSF46626
SUPFAM:SSF81496	UniParc:UPI0001B16CE1	SEG:seg	:	:	:

Description

hypothetical protein

Coordinates

chr19:-:30401548..30406348

Molecular Weight (calculated)

33591.2 Da

IEP (calculated)

6.955

GRAVY (calculated)

-0.167

Length

307 amino acids

Sequence
(BLAST)

001: MAGGVIQQIL RRKLHPRFTN SPLLSPIVAK KDDAGSSGSQ SLRALALIGA GLSGLFSFST MAAADEAEHG LACPSYPWPH KGILSSYDHA SIRRGHQVYT
101: EVCASCHSMS LISYRDLVGV AYTEEEVKAM AAEIEVVDGP NDEGEMFTRP GKLSDRFPQP YANEAAARFA NGGAYPPDLS LITKARHNGQ NYVFALLTGY
201: RDPPAGVSIR EGLHYNPYFP GGAIAMPKML NDGAVEYEDG TPATEAQMGK DVVSFLSWAA EPEMEERKLM GFKWIFVLSL ALLQAAYYRR LRWSVLKSRK
301: LVLDVVN

Best Arabidopsis Sequence Match ( AT5G40810.1 )
(BLAST)

001: MVGGGVIRQL LRRKLHSQSV ATPVLSWLSS KKANEDAGSA GLRAFALMGA GITGLLSFST VASADEAEHG LECPNYPWPH EGILSSYDHA SIRRGHQVYQ
101: QVCASCHSMS LISYRDLVGV AYTEEEAKAM AAEIEVVDGP NDEGEMFTRP GKLSDRLPEP YSNESAARFA NGGAYPPDLS LVTKARHNGQ NYVFALLTGY
201: RDPPAGISIR EGLHYNPYFP GGAIAMPKML NDEAVEYEDG TPATEAQMGK DVVSFLSWAA EPEMEERKLM GFKWIFLLSL ALLQAAYYRR LKWSVLKSRK
301: LVLDVVN

Arabidopsis Description

CYC12Cytochrome c1 2, heme protein, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q9FKS5]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.