Factsheet for VIT_14s0171g00330.t01

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 1
mitochondrion 9

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
HORVU3Hr1G098650.1	Barley	cytosol, peroxisome, plastid	59.68	92.96
Solyc02g093900.2.1	Tomato	nucleus, plastid	79.68	91.82
Bra025544.1-P	Field mustard	cytosol	22.9	86.59
Os05t0301700-01	Rice	mitochondrion	84.52	86.18
TraesCS7D01G277900.1	Wheat	mitochondrion	83.87	85.53
TraesCS7B01G175500.1	Wheat	mitochondrion	83.87	85.53
TraesCS7A01G278100.1	Wheat	golgi, unclear	83.87	85.53
KXG25408	Sorghum	mitochondrion	83.87	85.53
HORVU7Hr1G058850.1	Barley	mitochondrion	83.55	85.2
PGSC0003DMT400052104	Potato	mitochondrion	85.16	85.16
Os01t0935700-02	Rice	mitochondrion	82.9	84.54
Zm00001d049959_P001	Maize	mitochondrion	83.55	84.36
GSMUA_AchrUn_...	Banana	endoplasmic reticulum, extracellular, mitochondrion, plastid	10.32	84.21
CDY13693	Canola	mitochondrion	83.23	84.04
AT3G27240.1	Thale cress	mitochondrion	83.23	84.04
AT5G40810.1	Thale cress	mitochondrion	83.23	84.04
Bra032991.1-P	Field mustard	mitochondrion	83.23	84.04
CDY34168	Canola	mitochondrion	83.23	84.04
Bra039089.1-P	Field mustard	mitochondrion	82.9	83.71
CDY28482	Canola	mitochondrion	82.58	83.39
TraesCS3D01G451000.1	Wheat	mitochondrion	82.58	83.39
KRG94438	Soybean	mitochondrion	82.26	83.06
KRH07017	Soybean	mitochondrion	82.26	83.06
VIT_09s0002g05950.t01	Wine grape	endoplasmic reticulum, golgi	84.52	82.91
KRG94326	Soybean	mitochondrion	81.94	82.74
KRH57638	Soybean	mitochondrion	81.61	82.14
TraesCS3A01G458200.1	Wheat	cytosol, endoplasmic reticulum, mitochondrion	82.26	79.44
Bra025260.1-P	Field mustard	mitochondrion	73.87	75.33
GSMUA_AchrUn_...	Banana	endoplasmic reticulum, extracellular, vacuole	31.94	72.79
CDY20058	Canola	plastid	82.9	70.6
CDX83670	Canola	mitochondrion	82.58	68.82
Zm00001d031967_P001	Maize	cytosol, endoplasmic reticulum, peroxisome	80.97	68.58
CDY00164	Canola	endoplasmic reticulum	82.26	67.28
GSMUA_AchrUn_...	Banana	cytosol, mitochondrion	21.94	60.18
CDY36384	Canola	plastid	37.1	56.37
GSMUA_Achr5P17710_001	Banana	cytosol	39.35	49.8

Protein Annotations

Gene3D:1.10.760.10	Gene3D:1.20.5.100	EntrezGene:100250724	wikigene:100250724	MapMan:2.4.3.2	ProteinID:CBI40072
ProteinID:CBI40072.3	InterPro:Cyt_c-like_dom	InterPro:Cyt_c-like_dom_sf	InterPro:Cyt_c1	InterPro:Cyt_c1_TM_anchor_C	UniProt:D7UBF7
EMBL:FN596749	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0005739	GO:GO:0005750	GO:GO:0006091	GO:GO:0006122
GO:GO:0006139	GO:GO:0006810	GO:GO:0008150	GO:GO:0008152	GO:GO:0009055	GO:GO:0009058
GO:GO:0009987	GO:GO:0016020	GO:GO:0016021	GO:GO:0020037	GO:GO:0042776	GO:GO:0045153
GO:GO:0045155	GO:GO:0046872	InterPro:IPR009056	InterPro:IPR036909	EntrezGene:LOC100250724	wikigene:LOC100250724
PFAM:PF02167	PRINTS:PR00603	PFscan:PS51007	PANTHER:PTHR10266	PANTHER:PTHR10266:SF6	SUPFAM:SSF46626
SUPFAM:SSF81496	TIGR:TC55742	TMHMM:TMhelix	UniParc:UPI00015C98A5	ArrayExpress:VIT_14s0171g00330	EnsemblPlantsGene:VIT_14s0171g00330
EnsemblPlants:VIT_14s0171g00330.t01	unigene:Vvi.8995	RefSeq:XP_002264598	RefSeq:XP_002264598.2	RefSeq:XP_010660793.1	SEG:seg

Description

No Description!

Coordinates

chr14:+:26151747..26165340

Molecular Weight (calculated)

33852.4 Da

IEP (calculated)

6.955

GRAVY (calculated)

-0.187

Length

310 amino acids

Sequence
(BLAST)

001: MAGGRAIHQL LRMKLRSQST ASPALSSLLA KKDQEGVGSA GSKSLRALAL LGAGVSGLLS FATIASADEA EHGLECANYP WPHSGILSSY DHASIRRGHQ
101: VYQQVCASCH SMSLISYRDL VGVAYTEEET KAMAAEIEVA DGPNDEGEMF TRPGKLSDRF PQPYANEQAA RFANGGAYPP DLSLITKARH NGQNYVFALL
201: TGYRDPPAGI SIREGLHYNP YFPGGAIAMP KMLIDGALEY EDGTPATEAQ MGKDVVSFLT WAAEPEMEER KLMGFKWIFL LSLALLQAAY FRRLRWSVYK
301: SRKLIVDVVN

Best Arabidopsis Sequence Match ( AT5G40810.1 )
(BLAST)

001: MVGGGVIRQL LRRKLHSQSV ATPVLSWLSS KKANEDAGSA GLRAFALMGA GITGLLSFST VASADEAEHG LECPNYPWPH EGILSSYDHA SIRRGHQVYQ
101: QVCASCHSMS LISYRDLVGV AYTEEEAKAM AAEIEVVDGP NDEGEMFTRP GKLSDRLPEP YSNESAARFA NGGAYPPDLS LVTKARHNGQ NYVFALLTGY
201: RDPPAGISIR EGLHYNPYFP GGAIAMPKML NDEAVEYEDG TPATEAQMGK DVVSFLSWAA EPEMEERKLM GFKWIFLLSL ALLQAAYYRR LKWSVLKSRK
301: LVLDVVN

Arabidopsis Description

CYC12Cytochrome c1 2, heme protein, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q9FKS5]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.