Factsheet for VIT_09s0002g05950.t01

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum, golgi

Predictor Summary:

plastid 2
mitochondrion 2
extracellular 4
endoplasmic reticulum 5
vacuole 4
plasma membrane 4
golgi 5

Predictors

GFP

MS/MS

Papers

Winner Takes All:	endoplasmic reticulum, golgi
Any Predictor:	mitochondrion, plastid, secretory
BaCelLo:	plastid
EpiLoc:	mitochondrion
iPSORT:	secretory
MultiLoc:	golgi
Plant-mPloc:	mitochondrion
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plastid
YLoc:	endoplasmic reticulum

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
HORVU3Hr1G098650.1	Barley	cytosol, peroxisome, plastid	58.23	92.46
GSMUA_AchrUn_...	Banana	endoplasmic reticulum, extracellular, mitochondrion, plastid	10.76	89.47
VIT_14s0171g00330.t01	Wine grape	mitochondrion	82.91	84.52
Os01t0935700-02	Rice	mitochondrion	78.16	81.25
KXG25408	Sorghum	mitochondrion	78.16	81.25
Os05t0301700-01	Rice	mitochondrion	77.85	80.92
Zm00001d049959_P001	Maize	mitochondrion	78.16	80.46
PGSC0003DMT400073387	Potato	mitochondrion	81.33	80.31
TraesCS3D01G451000.1	Wheat	mitochondrion	77.85	80.13
TraesCS7A01G278100.1	Wheat	golgi, unclear	76.9	79.93
TraesCS7B01G175500.1	Wheat	mitochondrion	76.9	79.93
TraesCS7D01G277900.1	Wheat	mitochondrion	76.9	79.93
Solyc06g067920.2.1	Tomato	endoplasmic reticulum, nucleus, unclear	80.7	79.69
HORVU7Hr1G058850.1	Barley	mitochondrion	76.58	79.61
PGSC0003DMT400073726	Potato	mitochondrion	80.38	78.4
Solyc12g042920.1.1	Tomato	nucleus	80.06	78.09
TraesCS3A01G458200.1	Wheat	cytosol, endoplasmic reticulum, mitochondrion	77.22	76.01
GSMUA_AchrUn_...	Banana	endoplasmic reticulum, extracellular, vacuole	30.06	69.85
Zm00001d031967_P001	Maize	cytosol, endoplasmic reticulum, peroxisome	77.85	67.21
GSMUA_AchrUn_...	Banana	cytosol, mitochondrion	21.84	61.06
GSMUA_Achr5P17710_001	Banana	cytosol	39.56	51.02

Protein Annotations

Gene3D:1.10.760.10	Gene3D:1.20.5.100	EntrezGene:100261810	wikigene:100261810	MapMan:2.4.3.2	ProteinID:CBI36255
ProteinID:CBI36255.3	InterPro:Cyt_c-like_dom	InterPro:Cyt_c-like_dom_sf	InterPro:Cyt_c1	InterPro:Cyt_c1_TM_anchor_C	UniProt:D7U0V9
EMBL:FN596494	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0005739	GO:GO:0005750	GO:GO:0006091	GO:GO:0006122
GO:GO:0006139	GO:GO:0006810	GO:GO:0008150	GO:GO:0008152	GO:GO:0009055	GO:GO:0009058
GO:GO:0009987	GO:GO:0016020	GO:GO:0016021	GO:GO:0020037	GO:GO:0042776	GO:GO:0045153
GO:GO:0045155	GO:GO:0046872	InterPro:IPR009056	InterPro:IPR036909	EntrezGene:LOC100261810	wikigene:LOC100261810
PFAM:PF02167	PRINTS:PR00603	PFscan:PS51007	PANTHER:PTHR10266	PANTHER:PTHR10266:SF6	SUPFAM:SSF46626
SUPFAM:SSF81496	TIGR:TC55850	TMHMM:TMhelix	UniParc:UPI0001BE4A2B	ArrayExpress:VIT_09s0002g05950	EnsemblPlantsGene:VIT_09s0002g05950
EnsemblPlants:VIT_09s0002g05950.t01	unigene:Vvi.9507	RefSeq:XP_002285312	RefSeq:XP_002285312.1	SEG:seg	:

Description

No Description!

Coordinates

chr9:-:5759608..5762990

Molecular Weight (calculated)

34776.8 Da

IEP (calculated)

6.310

GRAVY (calculated)

-0.040

Length

316 amino acids

Sequence
(BLAST)

001: MYGFPISHWK IISLVFWLGS VMSWLTALPA PPLLILKQDQ NGPGVAGIKS LRVLALLGAG VSGLLSFATI ASSDEAEHGL ACPNYPWPHS GILSSYDHAS
101: IRRGHQVYQQ VCASCHSMSL ISFRDLVGVA YTEEETKAMA AEIEVDDGPN DEGEMFTRPG KLSDRFPQPY ANEQAARFAN GGAYPPDLSL ITKARHNGQN
201: YVFALLTGYR DPPAGVSIRD GLHYNPYFPG GAIAMPKMLI DGAVEYEDGT PATEAQMGKD VVTFLSWAAE PEMEERKLMG FKWIFVLSLA LLQAAYYRRL
301: KWSIFKSRKL IVDVVN

Best Arabidopsis Sequence Match ( AT5G40810.1 )
(BLAST)

001: MVGGGVIRQL LRRKLHSQSV ATPVLSWLSS KKANEDAGSA GLRAFALMGA GITGLLSFST VASADEAEHG LECPNYPWPH EGILSSYDHA SIRRGHQVYQ
101: QVCASCHSMS LISYRDLVGV AYTEEEAKAM AAEIEVVDGP NDEGEMFTRP GKLSDRLPEP YSNESAARFA NGGAYPPDLS LVTKARHNGQ NYVFALLTGY
201: RDPPAGISIR EGLHYNPYFP GGAIAMPKML NDEAVEYEDG TPATEAQMGK DVVSFLSWAA EPEMEERKLM GFKWIFLLSL ALLQAAYYRR LKWSVLKSRK
301: LVLDVVN

Arabidopsis Description

CYC12Cytochrome c1 2, heme protein, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q9FKS5]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.