Factsheet for PGSC0003DMT400073387

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 2
mitochondrion 8

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc06g067920.2.1	Tomato	endoplasmic reticulum, nucleus, unclear	98.44	98.44
HORVU3Hr1G098650.1	Barley	cytosol, peroxisome, plastid	58.75	94.47
PGSC0003DMT400073726	Potato	mitochondrion	90.62	89.51
GSMUA_AchrUn_...	Banana	endoplasmic reticulum, extracellular, mitochondrion, plastid	10.62	89.47
PGSC0003DMT400052104	Potato	mitochondrion	81.88	84.52
KXG25408	Sorghum	mitochondrion	79.38	83.55
Zm00001d049959_P001	Maize	mitochondrion	79.38	82.74
Os05t0301700-01	Rice	mitochondrion	78.44	82.57
Os01t0935700-02	Rice	mitochondrion	77.81	81.91
TraesCS7A01G278100.1	Wheat	golgi, unclear	77.5	81.58
TraesCS7B01G175500.1	Wheat	mitochondrion	77.5	81.58
TraesCS7D01G277900.1	Wheat	mitochondrion	77.5	81.58
TraesCS3D01G451000.1	Wheat	mitochondrion	78.12	81.43
VIT_09s0002g05950.t01	Wine grape	endoplasmic reticulum, golgi	80.31	81.33
HORVU7Hr1G058850.1	Barley	mitochondrion	77.19	81.25
TraesCS3A01G458200.1	Wheat	cytosol, endoplasmic reticulum, mitochondrion	77.81	77.57
Zm00001d031967_P001	Maize	cytosol, endoplasmic reticulum, peroxisome	78.44	68.58
GSMUA_AchrUn_...	Banana	endoplasmic reticulum, extracellular, vacuole	29.06	68.38
GSMUA_AchrUn_...	Banana	cytosol, mitochondrion	20.94	59.29
GSMUA_Achr5P17710_001	Banana	cytosol	40.62	53.06

Protein Annotations

Gene3D:1.10.760.10	Gene3D:1.20.5.100	MapMan:2.4.3.2	UniProt:A0A0C4B0N6	ProteinID:AAB28813	ProteinID:AAB28813.2
ProteinID:CAA44055	ProteinID:CAA44055.1	InterPro:Cyt_c-like_dom	InterPro:Cyt_c-like_dom_sf	InterPro:Cyt_c1	InterPro:Cyt_c1_TM_anchor_C
GO:GO:0003674	GO:GO:0003824	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0005739	GO:GO:0005743	GO:GO:0006091	GO:GO:0008150	GO:GO:0008152
GO:GO:0009055	GO:GO:0009987	GO:GO:0016020	GO:GO:0016021	GO:GO:0020037	GO:GO:0022900
GO:GO:0046872	GO:GO:0055114	GO:GO:0070469	InterPro:IPR009056	InterPro:IPR036909	PFAM:PF02167
EnsemblPlantsGene:PGSC0003DMG400028516	PGSC:PGSC0003DMG400028516	EnsemblPlants:PGSC0003DMT400073387	PRINTS:PR00603	PFscan:PS51007	PANTHER:PTHR10266
PANTHER:PTHR10266:SF6	EMBL:S66866	SUPFAM:SSF46626	SUPFAM:SSF81496	UniParc:UPI000009D057	EMBL:X62124
SEG:seg	:	:	:	:	:

Description

Cytochrome c1-1, heme protein, mitochondrial [Source:PGSC_GENE;Acc:PGSC0003DMG400028516]

Coordinates

chr6:-:49670565..49676112

Molecular Weight (calculated)

35119.8 Da

IEP (calculated)

7.251

GRAVY (calculated)

-0.252

Length

320 amino acids

Sequence
(BLAST)

001: MSLGKKIRIG FDGFGRINRF ITRGAAQRND SKLPSRNDAL KHGLDGLGSA GSKSFRALAA IGAGVSGLLS FATIAYSDEA EHGLECPSYP WPHEGILSSY
101: DHASIRRGHQ VYQQVCASCH SMSLISYRDL VGVAYTEEET KAMAAEIEVV DGPNDEGEMF TRPGKLSDRF PQPYANEAAA RFANGGAYPP DLSLITKARH
201: NGQNYVFALL TGYRDPPAGV SIREGLHYNP YFPGGAIAMP KMLNDGAVEY EDGIPATEAQ MGKDVVSFLS WAAEPEMEER KLMGFKWIFV LSLALLQAAY
301: YRRLRWSVLK SRKLVLDVVN

Best Arabidopsis Sequence Match ( AT5G40810.1 )
(BLAST)

001: MVGGGVIRQL LRRKLHSQSV ATPVLSWLSS KKANEDAGSA GLRAFALMGA GITGLLSFST VASADEAEHG LECPNYPWPH EGILSSYDHA SIRRGHQVYQ
101: QVCASCHSMS LISYRDLVGV AYTEEEAKAM AAEIEVVDGP NDEGEMFTRP GKLSDRLPEP YSNESAARFA NGGAYPPDLS LVTKARHNGQ NYVFALLTGY
201: RDPPAGISIR EGLHYNPYFP GGAIAMPKML NDEAVEYEDG TPATEAQMGK DVVSFLSWAA EPEMEERKLM GFKWIFLLSL ALLQAAYYRR LKWSVLKSRK
301: LVLDVVN

Arabidopsis Description

CYC12Cytochrome c1 2, heme protein, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q9FKS5]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.