Factsheet for Os01t0935700-02

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 3
mitochondrion 7

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
BAC19893

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G40810.1	BAC19893	ATMG00960.1	18644794

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
HORVU3Hr1G098650.1	Barley	cytosol, peroxisome, plastid	64.47	98.49
Bra025544.1-P	Field mustard	cytosol	24.67	91.46
TraesCS3D01G451000.1	Wheat	mitochondrion	90.79	89.9
Solyc02g093900.2.1	Tomato	nucleus, plastid	79.28	89.59
Os05t0301700-01	Rice	mitochondrion	88.82	88.82
TraesCS3A01G458200.1	Wheat	cytosol, endoplasmic reticulum, mitochondrion	90.79	85.98
GSMUA_Achr7P05470_001	Banana	mitochondrion	85.86	84.47
GSMUA_Achr1P18150_001	Banana	mitochondrion	84.54	83.71
GSMUA_Achr1P09720_001	Banana	mitochondrion	83.88	83.61
KRG94438	Soybean	mitochondrion	83.88	83.06
VIT_14s0171g00330.t01	Wine grape	mitochondrion	84.54	82.9
AT3G27240.1	Thale cress	mitochondrion	82.89	82.08
AT5G40810.1	Thale cress	mitochondrion	82.89	82.08
KRH07017	Soybean	mitochondrion	82.89	82.08
Bra032991.1-P	Field mustard	mitochondrion	82.57	81.76
CDY34168	Canola	mitochondrion	82.57	81.76
Bra039089.1-P	Field mustard	mitochondrion	82.24	81.43
CDY13693	Canola	mitochondrion	82.24	81.43
CDY28482	Canola	mitochondrion	82.24	81.43
PGSC0003DMT400052104	Potato	mitochondrion	82.57	80.97
KRG94326	Soybean	mitochondrion	80.59	79.8
KRH57638	Soybean	mitochondrion	80.59	79.55
VIT_09s0002g05950.t01	Wine grape	endoplasmic reticulum, golgi	81.25	78.16
PGSC0003DMT400073387	Potato	mitochondrion	81.91	77.81
Solyc06g067920.2.1	Tomato	endoplasmic reticulum, nucleus, unclear	81.91	77.81
PGSC0003DMT400073726	Potato	mitochondrion	81.91	76.85
Solyc12g042920.1.1	Tomato	nucleus	81.58	76.54
Bra025260.1-P	Field mustard	mitochondrion	72.37	72.37
CDY20058	Canola	plastid	82.24	68.68
CDX83670	Canola	mitochondrion	81.91	66.94
CDY00164	Canola	endoplasmic reticulum	82.24	65.96
CDY36384	Canola	plastid	39.14	58.33

Protein Annotations

Gene3D:1.10.760.10	Gene3D:1.20.5.100	MapMan:2.4.3.2	EntrezGene:4326795	EMBL:AK069403	ProteinID:BAB64199.1
ProteinID:BAF07236.1	ProteinID:BAS76094.1	InterPro:Cyt_c-like_dom	InterPro:Cyt_c-like_dom_sf	InterPro:Cyt_c1	InterPro:Cyt_c1_TM_anchor_C
ProteinID:EEE55961.1	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0005739	GO:GO:0005750	GO:GO:0006091	GO:GO:0006122
GO:GO:0006139	GO:GO:0006810	GO:GO:0008150	GO:GO:0008152	GO:GO:0009055	GO:GO:0009058
GO:GO:0009987	GO:GO:0016020	GO:GO:0020037	GO:GO:0022900	GO:GO:0042776	GO:GO:0045153
GO:GO:0045155	GO:GO:0046872	InterPro:IPR009056	InterPro:IPR036909	EnsemblPlantsGene:Os01g0935700	EnsemblPlants:Os01t0935700-02
PFAM:PF02167	PRINTS:PR00603	PFscan:PS51007	PANTHER:PTHR10266	PANTHER:PTHR10266:SF6	UniProt:Q942X6
SUPFAM:SSF46626	SUPFAM:SSF81496	UniParc:UPI00000A303C	RefSeq:XP_015619474.1	SEG:seg	:

Description

Similar to Cytochrome c1, heme protein. (Os01t0935700-01);Similar to Cytochrome c1 (Fragment). (Os01t0935700-02)

Coordinates

chr1:+:41074505..41079262

Molecular Weight (calculated)

33270.5 Da

IEP (calculated)

6.424

GRAVY (calculated)

-0.201

Length

304 amino acids

Sequence
(BLAST)

001: MAAGRGISQL LKKAFRPSSS SPLSSSWINH EESSGFTGLR ALAILGVGAS GLLSFATIAS ADEAEHGLEA PHYPWPHAGI LSSYDHASIR RGHQVYTQVC
101: ASCHSMSLIS YRDLVGVAYT EEETKAMAAE IEVVDGPNDE GEMFTRPGKL SDRFPQPYAN EQAARFSNGG AYPPDLSLIT KARHNGQNYV FALLTGYRDP
201: PAGVSIREGL HYNPYFPGGA IAMPKMLIDG AVEYEDGTPA TEAQMGKDVV SFLSWAAEPE MEERKLMGVK WIFLLSLALL QAAYYRRMKW SVYKSRKLVL
301: DVVN

Best Arabidopsis Sequence Match ( AT5G40810.1 )
(BLAST)

001: MVGGGVIRQL LRRKLHSQSV ATPVLSWLSS KKANEDAGSA GLRAFALMGA GITGLLSFST VASADEAEHG LECPNYPWPH EGILSSYDHA SIRRGHQVYQ
101: QVCASCHSMS LISYRDLVGV AYTEEEAKAM AAEIEVVDGP NDEGEMFTRP GKLSDRLPEP YSNESAARFA NGGAYPPDLS LVTKARHNGQ NYVFALLTGY
201: RDPPAGISIR EGLHYNPYFP GGAIAMPKML NDEAVEYEDG TPATEAQMGK DVVSFLSWAA EPEMEERKLM GFKWIFLLSL ALLQAAYYRR LKWSVLKSRK
301: LVLDVVN

Arabidopsis Description

CYC12Cytochrome c1 2, heme protein, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q9FKS5]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.