Factsheet for Bra039089.1-P

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 4
mitochondrion 7

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra025544.1-P	Field mustard	cytosol	25.73	96.34
Bra032991.1-P	Field mustard	mitochondrion	95.77	95.77
AT3G27240.1	Thale cress	mitochondrion	95.11	95.11
HORVU3Hr1G098650.1	Barley	cytosol, peroxisome, plastid	61.24	94.47
Solyc02g093900.2.1	Tomato	nucleus, plastid	79.8	91.08
GSMUA_AchrUn_...	Banana	endoplasmic reticulum, extracellular, mitochondrion, plastid	11.07	89.47
Bra025260.1-P	Field mustard	mitochondrion	87.3	88.16
KXG25408	Sorghum	mitochondrion	84.04	84.87
KRG94438	Soybean	mitochondrion	84.69	84.69
CDY20058	Canola	plastid	100.0	84.34
Os05t0301700-01	Rice	mitochondrion	83.39	84.21
KRH07017	Soybean	mitochondrion	84.04	84.04
PGSC0003DMT400052104	Potato	mitochondrion	84.36	83.55
Zm00001d049959_P001	Maize	mitochondrion	83.39	83.39
TraesCS7A01G278100.1	Wheat	golgi, unclear	82.41	83.22
TraesCS7B01G175500.1	Wheat	mitochondrion	82.41	83.22
TraesCS7D01G277900.1	Wheat	mitochondrion	82.41	83.22
VIT_14s0171g00330.t01	Wine grape	mitochondrion	83.71	82.9
KRG94326	Soybean	mitochondrion	82.41	82.41
Os01t0935700-02	Rice	mitochondrion	81.43	82.24
HORVU7Hr1G058850.1	Barley	mitochondrion	81.43	82.24
KRH57638	Soybean	mitochondrion	82.41	82.14
TraesCS3D01G451000.1	Wheat	mitochondrion	81.43	81.43
TraesCS3A01G458200.1	Wheat	cytosol, endoplasmic reticulum, mitochondrion	81.11	77.57
Zm00001d031967_P001	Maize	cytosol, endoplasmic reticulum, peroxisome	82.08	68.85
GSMUA_AchrUn_...	Banana	endoplasmic reticulum, extracellular, vacuole	30.29	68.38
GSMUA_AchrUn_...	Banana	cytosol, mitochondrion	21.5	58.41
GSMUA_Achr5P17710_001	Banana	cytosol	40.72	51.02

Protein Annotations

Gene3D:1.10.760.10	Gene3D:1.20.5.100	MapMan:2.4.3.2	EnsemblPlantsGene:Bra039089	EnsemblPlants:Bra039089.1	EnsemblPlants:Bra039089.1-P
InterPro:Cyt_c-like_dom	InterPro:Cyt_c-like_dom_sf	InterPro:Cyt_c1	InterPro:Cyt_c1_TM_anchor_C	GO:GO:0003674	GO:GO:0003824
GO:GO:0005488	GO:GO:0006091	GO:GO:0008150	GO:GO:0008152	GO:GO:0009055	GO:GO:0009987
GO:GO:0020037	GO:GO:0022900	GO:GO:0046872	InterPro:IPR009056	InterPro:IPR036909	UniProt:M4FDB8
PFAM:PF02167	PRINTS:PR00603	PFscan:PS51007	PANTHER:PTHR10266	PANTHER:PTHR10266:SF6	SUPFAM:SSF46626
SUPFAM:SSF81496	UniParc:UPI0002541B8B	SEG:seg	:	:	:

Description

AT3G27240 (E=8e-151) | cytochrome c1, putative

Coordinates

chrA09:-:1195115..1196969

Molecular Weight (calculated)

33598.0 Da

IEP (calculated)

6.423

GRAVY (calculated)

-0.159

Length

307 amino acids

Sequence
(BLAST)

001: MVGGGVFQQI LRRKLHSPSL ATPVRSWLSS KTAHVEAGSS GVRAFALLGA GVTGLLSFST VASADEAEHG LACPDYPWPH DGILSSYDHA SIRRGHQVYQ
101: QVCASCHSMS LISYRDLVGV AYTEEEAKAM AAEIEVVDGP NDEGEMFTRP GKLSDRLPQP YANESAARFA NGGAYPPDLS LITKARHNGQ NYVFALLTGY
201: RDPPAGISIR EGLHYNPYFP GGAIAMPKML NDEAVEYEDG VPATEAQMGK DVVSFLSWAA EPEMEERKLM GFKWIFLLSL ALLQAAYYRR LKWSVLKSRK
301: LVLDVVN

Best Arabidopsis Sequence Match ( AT3G27240.1 )
(BLAST)

001: MVGGGVIQQI LRRKLHSQSL ATPVLSWFSS KKAHEDAGSS GVRALALLGA GVTGLLSFST VASADEAEHG LESPEYPWPH DGILSSYDHA SIRRGHQVYQ
101: QVCASCHSMS LISYRDLVGV AYTEEEAKAM AAEIEVVDGP NDEGEMFTRP GKLSDRFPQP YANESAARFA NGGAYPPDLS LITKARHNGP NYVFALLTGY
201: RDPPAGISIR EGLHYNPYFP GGAIAMPKML NDEAVEYEDG VPATEAQMGK DIVSFLAWAA EPEMEERKLM GFKWIFLLSL ALLQAAYYRR LKWSVLKSRK
301: LVLDVVN

Arabidopsis Description

CYC11Cytochrome c1 1, heme protein, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q9LK29]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.