Factsheet for Solyc02g093900.2.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus, plastid

Predictor Summary:

extracellular 6
golgi 6
plasma membrane 5
endoplasmic reticulum 5
vacuole 5
mitochondrion 3

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus, plastid
Any Predictor:	mitochondrion, secretory
BaCelLo:	secretory
EpiLoc:	mitochondrion
iPSORT:	secretory
MultiLoc:	golgi
Plant-mPloc:	mitochondrion
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	extracellular
YLoc:	mitochondrion

plastid: 22908117
nucleus: 25464976
plastid: 26371478
nucleus: 28394025

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

msms PMID: 22908117 doi

C Barsan, M Zouine, E Maza, W Bian, I Egea, M Rossignol, D Bouyssie, C Pichereaux, E Purgatto, M Bouzayen, A Latché, JC Pech

Université de Toulouse, Institut National Polytechnique-Ecole Nationale Supérieure Agronomique de Toulouse, Génomique et Biotechnologie des Fruits, Castanet-Tolosan F-31326, France.

msms PMID: 26371478 doi

M Suzuki, S Takahashi, T Kondo, H Dohra, Y Ito, Y Kiriiwa, M Hayashi, S Kamiya, M Kato, M Fujiwara, Y Fukao, M Kobayashi, N Nagata, R Motohashi

Faculty of Agriculture, Shizuoka University, Shizuoka city, Shizuoka, Japan., Faculty of Science, Japan Woman's University, Bunkyo-ku, Tokyo, Japan., Instrumental Research Support Office, Research Institute of Green Science and Technology, Shizuoka University, Shizuoka city, Shizuoka, Japan., The Plant Science Education Unit, Nara Institute of Science and Technology, Ikoma city, Nara, Japan.

msms PMID: 25464976 doi

Y Wang, W Wang, J Cai, Y Zhang, G Qin, S Tian

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
HORVU3Hr1G098650.1	Barley	cytosol, peroxisome, plastid	68.03	91.96
Bra025544.1-P	Field mustard	cytosol	27.88	91.46
GSMUA_AchrUn_...	Banana	endoplasmic reticulum, extracellular, mitochondrion, plastid	12.64	89.47
PGSC0003DMT400052104	Potato	mitochondrion	99.63	86.45
KRH57638	Soybean	mitochondrion	93.31	81.49
KRG94438	Soybean	mitochondrion	92.94	81.43
KRH07017	Soybean	mitochondrion	92.94	81.43
KRG94326	Soybean	mitochondrion	92.57	81.11
Os05t0301700-01	Rice	mitochondrion	90.33	79.93
Bra039089.1-P	Field mustard	mitochondrion	91.08	79.8
CDY13693	Canola	mitochondrion	91.08	79.8
CDY28482	Canola	mitochondrion	91.08	79.8
CDY34168	Canola	mitochondrion	91.08	79.8
Bra032991.1-P	Field mustard	mitochondrion	91.08	79.8
AT3G27240.1	Thale cress	mitochondrion	91.08	79.8
VIT_14s0171g00330.t01	Wine grape	mitochondrion	91.82	79.68
KXG25408	Sorghum	mitochondrion	89.96	79.61
Solyc06g067920.2.1	Tomato	endoplasmic reticulum, nucleus, unclear	94.42	79.38
Os01t0935700-02	Rice	mitochondrion	89.59	79.28
Zm00001d049959_P001	Maize	mitochondrion	90.33	79.15
HORVU7Hr1G058850.1	Barley	mitochondrion	89.22	78.95
TraesCS7A01G278100.1	Wheat	golgi, unclear	89.22	78.95
TraesCS7B01G175500.1	Wheat	mitochondrion	89.22	78.95
TraesCS7D01G277900.1	Wheat	mitochondrion	89.22	78.95
AT5G40810.1	Thale cress	mitochondrion	89.96	78.83
Solyc12g042920.1.1	Tomato	nucleus	94.05	78.09
TraesCS3D01G451000.1	Wheat	mitochondrion	88.1	77.2
TraesCS3A01G458200.1	Wheat	cytosol, endoplasmic reticulum, mitochondrion	87.73	73.52
Bra025260.1-P	Field mustard	mitochondrion	79.93	70.72
CDY20058	Canola	plastid	91.08	67.31
Zm00001d031967_P001	Maize	cytosol, endoplasmic reticulum, peroxisome	89.96	66.12
CDX83670	Canola	mitochondrion	90.71	65.59
GSMUA_AchrUn_...	Banana	endoplasmic reticulum, extracellular, vacuole	32.71	64.71
CDY00164	Canola	endoplasmic reticulum	91.08	64.64
GSMUA_AchrUn_...	Banana	cytosol, mitochondrion	25.28	60.18
CDY36384	Canola	plastid	42.75	56.37
GSMUA_Achr5P17710_001	Banana	cytosol	47.21	51.84

Protein Annotations

Gene3D:1.10.760.10	Gene3D:1.20.5.100	MapMan:2.4.3.2	InterPro:Cyt_c-like_dom	InterPro:Cyt_c-like_dom_sf	InterPro:Cyt_c1
InterPro:Cyt_c1_TM_anchor_C	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0005739	GO:GO:0005750	GO:GO:0006091	GO:GO:0006122
GO:GO:0006139	GO:GO:0006810	GO:GO:0008150	GO:GO:0008152	GO:GO:0009055	GO:GO:0009058
GO:GO:0009987	GO:GO:0016020	GO:GO:0020037	GO:GO:0042776	GO:GO:0045153	GO:GO:0045155
GO:GO:0046872	InterPro:IPR009056	InterPro:IPR036909	UniProt:K4BDI6	PFAM:PF02167	PRINTS:PR00603
PFscan:PS51007	PANTHER:PTHR10266	PANTHER:PTHR10266:SF6	SUPFAM:SSF46626	SUPFAM:SSF81496	SignalP:SignalP-noTM
EnsemblPlantsGene:Solyc02g093900.2	EnsemblPlants:Solyc02g093900.2.1	UniParc:UPI00027688C9	SEG:seg	:	:

Description

No Description!

Coordinates

chr2:-:54600257..54605124

Molecular Weight (calculated)

29570.3 Da

IEP (calculated)

5.901

GRAVY (calculated)

-0.159

Length

269 amino acids

Sequence
(BLAST)

001: MKSFRTLALI GAGVSGLLGF ATVASADEAE HGLECPSYPW PHAGILSSYD HASIRRGHQV YQQVCASCHS MSLVSYRDLV GVAYTEEEVK AMAAEIEVAD
101: GPNDEGEMFT RPGKLSDRFP QPYPNEAAAR FANGGAYPPD LSLITKARHN GQNYVFALLT GYRDPPAGVS IREGLHYNPY FPGGAIAMPK MLNDGAVEYE
201: DGVPATEAQM GKDVVSFLTW AAEPEMEERK LMGFKWIFVL SLALLQAAYY RRLRWSVLKS RKLVLDVVN

Best Arabidopsis Sequence Match ( AT5G40810.1 )
(BLAST)

001: MVGGGVIRQL LRRKLHSQSV ATPVLSWLSS KKANEDAGSA GLRAFALMGA GITGLLSFST VASADEAEHG LECPNYPWPH EGILSSYDHA SIRRGHQVYQ
101: QVCASCHSMS LISYRDLVGV AYTEEEAKAM AAEIEVVDGP NDEGEMFTRP GKLSDRLPEP YSNESAARFA NGGAYPPDLS LVTKARHNGQ NYVFALLTGY
201: RDPPAGISIR EGLHYNPYFP GGAIAMPKML NDEAVEYEDG TPATEAQMGK DVVSFLSWAA EPEMEERKLM GFKWIFLLSL ALLQAAYYRR LKWSVLKSRK
301: LVLDVVN

Arabidopsis Description

CYC12Cytochrome c1 2, heme protein, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q9FKS5]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.